Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_E23
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       71   9e-15
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.43 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.43 
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   1.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 70.9 bits (166), Expect = 9e-15
 Identities = 34/80 (42%), Positives = 46/80 (57%)
 Frame = -1

Query: 579 NELSCVCLHGDRKPKERKDNLEIFKNSQVKFLICTDVAARGIDISGLPFMINITLPDEKS 400
           N      +HGDR  ++R++ L  FK+ ++  L+ T VAARG+DI  +  +IN  LP    
Sbjct: 474 NNYPTTSIHGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGID 533

Query: 399 NYVHRIGRVGRAERMGLAIS 340
            YVHRIGR GR    G A S
Sbjct: 534 EYVHRIGRTGRVGNRGRATS 553


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +2

Query: 440 RPEMSMPRAATSVQIKNF----TWLFLNISKLSLRSFGFRSPCRQTQDSS 577
           +P MS+       Q +++    TWL L+ S +S+ S G +SP     D++
Sbjct: 6   KPMMSVTAIIQGTQAQHWSRGNTWLSLDNSNMSMSSVGPQSPLDMKPDTA 55


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +2

Query: 440 RPEMSMPRAATSVQIKNF----TWLFLNISKLSLRSFGFRSPCRQTQDSS 577
           +P MS+       Q +++    TWL L+ S +S+ S G +SP     D++
Sbjct: 6   KPMMSVTAIIQGTQAQHWSRGNTWLSLDNSNMSMSSVGPQSPLDMKPDTA 55


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = +3

Query: 354 PCVP-RDRRARCDVRSW 401
           P +P R RR  CDV SW
Sbjct: 53  PLLPLRHRRVTCDVLSW 69


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -1

Query: 474 DVAARGIDISGLPFMINITLPDEKSNYVHRIGRVGRAERMGLAISLVSTVPEKVWYHG-E 298
           ++  +GID   + F  +IT     +  + ++ R   AER+G     +S + +  W+ G  
Sbjct: 575 NIILKGID--AIEFPRSITR--NATALIKKLCRDNPAERLGYQKGGISEIQKHKWFDGFN 630

Query: 297 WCSSRGR 277
           W   R R
Sbjct: 631 WEGLRAR 637


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 269 QQFRPRDEHHSP*YHTFSGTVETRLMARPMRSARP 373
           +Q   R + H P  H+  GT+E  +  R    A P
Sbjct: 347 KQTEVRFKVHDPKAHSKGGTLENTINGRADEEAAP 381


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 269 QQFRPRDEHHSP*YHTFSGTVETRLMARPMRSARP 373
           +Q   R + H P  H+  GT+E  +  R    A P
Sbjct: 347 KQTEVRFKVHDPKAHSKGGTLENTINGRADEEAAP 381


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +1

Query: 85  TSLFSFFTVNY---FTVKLIGWDFHIRLDLLYRDI*VIFNIRQV 207
           TSL S     Y    T  LIGW   + + L+Y  + +IF  R +
Sbjct: 378 TSLVSLDKKQYTWRHTSVLIGWSAFLCISLVYIIMLIIFIPRNI 421


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +2

Query: 296 HSP*YHTFSGTVETRLMARPMRSARP 373
           H P  H+  GT+E  +  R    A P
Sbjct: 294 HDPKAHSKGGTLENTINGRADEEAAP 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,901
Number of Sequences: 438
Number of extensions: 3515
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)