Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_E19
         (422 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   4.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.5  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   7.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   10.0 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    20   10.0 

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 271 NQFHVYSLSLWSLVVRMFDI 330
           N+ H  S   WSL V MF++
Sbjct: 539 NKGHDISADYWSLGVLMFEL 558


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -1

Query: 374 WHILWVV 354
           WH LW+V
Sbjct: 2   WHFLWIV 8


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 150 NYKYSCYN*RR*RHKGVTNRNS 215
           NYKYS YN     +    N N+
Sbjct: 321 NYKYSNYNNYNNNYNNYNNYNN 342


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 310 PVTRERESTHETD 272
           PVT +R+ T ET+
Sbjct: 622 PVTTKRDGTQETE 634


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 286 THETDYPLHLWTRISCELLNLI 221
           T   DYP   W  ++ E  NLI
Sbjct: 126 TGSYDYPSPEWDTVTPEAKNLI 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,171
Number of Sequences: 438
Number of extensions: 1570
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)