Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_E17
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    27   1.5  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    25   5.9  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    25   7.8  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    25   7.8  
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz...    25   7.8  

>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = -1

Query: 302 KNCDLLITKQYRNRSRLLRWMTVFTLITKFCNVVQSKIID 183
           ++ DLL++K  +N+  + RW+    LI    ++V ++++D
Sbjct: 389 ESVDLLVSKIKKNKKCVNRWLRTRVLIIDEVSMVDAELMD 428


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -1

Query: 317 EKFHFKNCDLLITKQYRNRSRLLRWMTVFTLITKFCNVVQSKIIDIYVKMKYELAKMY 144
           EKF  K C LL+   +RNR +  +       +    N   +++ID ++   + LA+ +
Sbjct: 482 EKFIKKYCRLLLAAAHRNREKCKKLSVELGYLN---NHESAQMIDAHINSIFTLAEPF 536


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 66  SKSFWKSLTEQLINYMDENIHFISKRIH 149
           SK  W+SL ++    +D +I+ I +R H
Sbjct: 32  SKRNWRSLAKKFSCKLDRDIYAIDQRCH 59


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = +1

Query: 103 LITWTKIFISLVS---VYILASSYFIF 174
           L TW  + +SLVS   +Y +AS++F F
Sbjct: 8   LTTWNPVTVSLVSPVIIYWVASAFFGF 34


>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
           Mug22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 54  VQVLSKSFWKSLTEQLINYMDENIHFISKR 143
           + V SK+  KS  E++ NY+ + + FIS+R
Sbjct: 40  ISVSSKNA-KSYAEEMYNYVTQEMVFISER 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,686,876
Number of Sequences: 5004
Number of extensions: 29990
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)