Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_E16
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    29   0.67 
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    28   1.5  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         27   2.0  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           27   3.6  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    26   4.7  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    26   6.2  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   6.2  

>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 615 QRVFKNKQNVTNNAKNWITFFYTVSS 538
           Q+ FK K  V++ AKNW+   +++SS
Sbjct: 53  QKKFKEKPKVSHKAKNWVRQPFSISS 78


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 396 GSGDASQRTDYLLGNESAFSLDSYLKKKLC-FTSSL 500
           GSG  S R DYLLGNE   + D+   + LC F S++
Sbjct: 293 GSGIVS-RQDYLLGNEQDVTEDTERLENLCSFQSTI 327


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 394 WVPVTRHSEPIISLETNPRSPW 459
           W+ +T   EP+  + +N R PW
Sbjct: 304 WLKITAFGEPLFDVYSNMRKPW 325


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 650 GRSFTVFIVPDCKGFLKINRMLP 582
           G+ FTVF++P  +    ++++LP
Sbjct: 236 GKRFTVFLIPTVRQIFPVSKLLP 258


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 281 TAFDLKKY*RCFSLASLPPV--NNVYASLTNRVYSYIG 174
           T FDLK+  R F    +     NNV   L NRVYS  G
Sbjct: 228 TRFDLKRLSRKFRFLKVTCQHRNNVGTDLANRVYSIEG 265


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/46 (19%), Positives = 23/46 (50%)
 Frame = -3

Query: 630 YRTGLQRVFKNKQNVTNNAKNWITFFYTVSSVIIHQEFIKECLSVM 493
           + T     F++  +  + A NW  F  T +  +IH+ +  + ++++
Sbjct: 360 FGTSSDSFFRDNLSWLSKANNWSKFTATAALGVIHRGYYNQAMNIL 405


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -3

Query: 603 KNKQNVTNNAKNWITF---FYTVSSVIIHQEFIKECLSVMM*NKVFFLNKN 460
           K KQN  + +K+W++F   F  +S  IIH+  + +  +       FF N++
Sbjct: 842 KEKQN-EHTSKSWVSFISVFDMISKKIIHESPLGDNEAAFSMTAAFFKNRD 891


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,852
Number of Sequences: 5004
Number of extensions: 58600
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)