Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_E14
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 129 2e-30
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 127 7e-30
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 118 4e-27
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 33 0.16
04_04_1662 - 35149985-35150290,35150548-35150929,35150953-351510... 28 8.2
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 129 bits (311), Expect = 2e-30
Identities = 79/195 (40%), Positives = 104/195 (53%), Gaps = 5/195 (2%)
Frame = -2
Query: 682 MAVGDVKTAQGLNDLNQYLAEKXYVXGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 503
+ + +V + GL L++YL + Y+ GY S+ D+ VF + APAA+ +V RWY+ I+
Sbjct: 22 ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHIS 81
Query: 502 -----SYTSAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXX 338
S +AE + ++ DVDLFG
Sbjct: 82 ALLRSSGVTAEGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE- 140
Query: 337 XXXRLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLV 158
+A A K S K KSS+LLDVKPWDDETDM ++E VR ++MEGLLWGASKLV
Sbjct: 141 -----RAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLV 195
Query: 157 PVGYGIXKLQIMCGI 113
PVGYGI KLQIM I
Sbjct: 196 PVGYGIKKLQIMMTI 210
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 127 bits (307), Expect = 7e-30
Identities = 77/190 (40%), Positives = 99/190 (52%), Gaps = 4/190 (2%)
Frame = -2
Query: 670 DVKTAQGLNDLNQYLAEKXYVXGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTS 491
D+ TA GL L Q+L+ K YV G S+ D++VF V P A P+ RWY+ +A+ +
Sbjct: 7 DLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALA 66
Query: 490 AERKTWSQGTS----PLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXXXXRL 323
+ + G + D+DLFG
Sbjct: 67 SRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAAD------- 119
Query: 322 KAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYG 143
+ A K S K KSS+LLDVKPWDDETDMK++E VR+++MEGL WGASKLVPVGYG
Sbjct: 120 ERAASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYG 179
Query: 142 IXKLQIMCGI 113
I KLQIM I
Sbjct: 180 IKKLQIMLTI 189
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 118 bits (284), Expect = 4e-27
Identities = 76/194 (39%), Positives = 97/194 (50%), Gaps = 8/194 (4%)
Frame = -2
Query: 670 DVKTAQGLNDLNQYLAEKXYVXGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI----- 506
+V + GL L++YL + Y+ GY S D+ V+ AP+++ +V RW+ I
Sbjct: 7 NVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLR 66
Query: 505 ASYTSAER---KTWSQGTSPLXXXXXXXXXXXXXXXXXXXDVDLFGSGXXXXXXXXXXXX 335
S +A+ K S DVDLFG
Sbjct: 67 LSGVTADGQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEE-- 124
Query: 334 XXRLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVP 155
+A A K S K KSS+LLDVKPWDDETDM ++E VR ++MEGLLWGASKLVP
Sbjct: 125 ----RAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVP 180
Query: 154 VGYGIXKLQIMCGI 113
VGYGI KLQIM I
Sbjct: 181 VGYGIKKLQIMMTI 194
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 33.5 bits (73), Expect = 0.16
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Frame = -2
Query: 649 LNDLNQYLAEKXYVXG--YTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 506
L +LNQ L++K + G + PS AD+ VF + G+ PHVLRW + I
Sbjct: 76 LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>04_04_1662 -
35149985-35150290,35150548-35150929,35150953-35151055,
35151186-35151252
Length = 285
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 152 WVWHKXTANYVWHTRTT 102
W+W TA VW+ RTT
Sbjct: 43 WIWPDPTAGRVWYRRTT 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,878,844
Number of Sequences: 37544
Number of extensions: 335211
Number of successful extensions: 868
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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