Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_E11
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 1.5
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce... 27 2.0
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 27 2.0
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 2.6
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 3.4
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.5
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 26 4.5
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 25 6.0
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 25 6.0
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 25 6.0
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 6.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.9
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 25 7.9
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 7.9
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/61 (21%), Positives = 29/61 (47%)
Frame = -3
Query: 487 QLRESLQGVEPPAPRSEADFDPAAKYHIAADVEYMRYYISYIIQFQFHRSLCQLAGEYAV 308
+L E++Q + + + A + + +Y ++YI ++QF+ L +L G+
Sbjct: 897 KLEENVQCISDRFSKGMSGMGYAGEVRLGKSDDYDKWYIDILVQFREEEGLQKLTGQRQS 956
Query: 307 G 305
G
Sbjct: 957 G 957
>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 27.1 bits (57), Expect = 2.0
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = -3
Query: 328 LAGEYAVGDSSRLLSNCDIYN-STAAGNALGKMLQLGSSKPWPDAMEAITGQRFMDASGV 152
L + +G+++R+ N + + S + +A KML + +A+E + +D S
Sbjct: 26 LTDNFGMGNANRVNLNQQVLDGSISFRDAFAKMLD-SVHLSYDEALEVLKKNVAIDPS-- 82
Query: 151 LEYFQPLYDWLKAENER 101
F+P Y+W K+++ R
Sbjct: 83 ---FKPFYEWCKSQDIR 96
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 304 DSSRLLSNCDIYNSTAAGNALGKMLQLGSSK 212
D R++ CD Y S ++ L K LQL SS+
Sbjct: 766 DLGRVIKICDWYQSPSSDVLLSKPLQLNSSE 796
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 134 RLEVLQDAAGIHEPLSSYRFHRVGPRLRRTQLQHF 238
RL + +D GI +PL+ Y+F P L + HF
Sbjct: 1918 RLVISEDVQGISQPLTVYQFICKAPDLFFSCCSHF 1952
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 26.2 bits (55), Expect = 3.4
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -3
Query: 292 LLSNCDIYNSTAAGNALGKMLQLGSSKPWPDAMEAITGQRFMDASGV-LEYFQPLYDWLK 116
L+ N + S N + + QL ++P PD + ++ QR+ V + L WL+
Sbjct: 1280 LVLNVILTESELEVNKVIEEFQLVINQPGPDGLNSVGQQRYTSFVDVFFKIVDYLNKWLR 1339
Query: 115 AENERN 98
+RN
Sbjct: 1340 MRKKRN 1345
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.8 bits (54), Expect = 4.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 469 QGVEPPAPRSEADFDPAAKYHIAADVEY 386
+ VE P P A+ +PA +Y I + V +
Sbjct: 285 KSVETPVPMEAAEEEPATEYSIPSSVTF 312
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 325 AGEYAVGDSSRLLSNCDIYNSTAAG-NALGKMLQ 227
+ ++ + D + + SNC +YN T + +GK LQ
Sbjct: 292 SAQHFIDDMNLMFSNCFLYNGTESPVGVMGKNLQ 325
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 310 VGDSSRLLSNCDIYNSTAAG-NALGKMLQ 227
+ D + + SNC +YN T + ++GK LQ
Sbjct: 152 IDDMNLMFSNCFLYNGTESPVGSMGKALQ 180
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 333 ASSPGSTRSATPAGCSQTAI 274
ASSPGSTR TP ++T +
Sbjct: 36 ASSPGSTRLTTPRTTARTPL 55
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 6.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 481 RESLQGVEPPAPRSEADFDPAAKYHIAA 398
R ++ + PPAPR+ F P ++Y + A
Sbjct: 300 RANVVSIIPPAPRNTLIFSPNSRYILLA 327
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 467 LQGLSELPEVTIVVVNCGSSSEDAI 541
L+GL EL + I+ NC S S DAI
Sbjct: 525 LRGLKELKRIDII--NCDSVSRDAI 547
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 7.9
Identities = 21/89 (23%), Positives = 38/89 (42%)
Frame = -1
Query: 327 SPGSTRSATPAGCSQTAIFTTARRQETLSAKCCNWVLRSRGPTRWKR*LDKGSWMPAASW 148
S S+ S+T + S ++ +TA + S+ + S PT + S ++
Sbjct: 242 STSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPT 301
Query: 147 STSSLYTIGSRPRTNEMENLSVGSLVPSN 61
STSS + S ++ LS S+ S+
Sbjct: 302 STSSTISSSSSSSSSFSSTLSSSSMSSSS 330
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 204 PTRWKR*LDKGSWMPAASWSTSSLYTIGSRPRTNEMENL 88
P +W L+ +PA + TS + TIG P++N +E L
Sbjct: 8 PKQWVAGLNSELDIPAVNRRTSIICTIG--PKSNNVETL 44
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 7.9
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 3 FNLXFKPVASIAAFWFGVQNWTVL-GSQPTNSPFRSFSALSQSY 131
FN PV+S+ +G + ++L G+ PT+S F S S +S +Y
Sbjct: 21 FNFPSAPVSSLDTNNYGQRRPSLLSGTSPTSSFFNS-SMISSNY 63
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,763
Number of Sequences: 5004
Number of extensions: 50632
Number of successful extensions: 161
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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