Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_E11
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0008 + 12115147-12115354,12115397-12116130 31 0.86
08_01_0961 - 9622444-9622928,9623011-9623102,9623862-9624002,962... 30 1.5
06_01_0483 + 3437707-3438342 30 1.5
12_02_0254 + 16451683-16451985 29 2.0
04_03_0806 + 19857675-19859135 29 2.0
07_03_0759 - 21299502-21299807,21299889-21300039,21300151-213003... 29 3.5
07_01_0644 + 4805262-4805712,4806173-4806356,4806511-4806613 29 3.5
10_08_0383 - 17424194-17425567 28 4.6
02_05_1023 + 33580416-33580904 28 4.6
09_06_0298 - 22117451-22118698 27 8.0
07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387... 27 8.0
04_03_0436 + 15918144-15918377,15918514-15918717,15918813-15918911 27 8.0
02_02_0313 - 8866182-8866381,8866470-8866638 27 8.0
>11_04_0008 + 12115147-12115354,12115397-12116130
Length = 313
Score = 30.7 bits (66), Expect = 0.86
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = -2
Query: 341 FVMPARRGVRGRRLQQAALKLRYLQQHGGRKRSRQ----NAAIGFFEAVARRDGSDNWTK 174
FV P G+RG+R+ Q + Q+ GR R RQ A G E R G
Sbjct: 235 FVRPWHSGIRGQRVAQGRVASLLRQRERGRARERQLRVGRAGEGRGEGSCRASGRGAPAL 294
Query: 173 VHGCQRR 153
CQR+
Sbjct: 295 PQLCQRK 301
>08_01_0961 -
9622444-9622928,9623011-9623102,9623862-9624002,
9624460-9624506,9624581-9624639,9624780-9624940,
9625021-9625196,9625284-9625355,9625820-9625879,
9625997-9626191
Length = 495
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 387 YSTSAAIWYFAAGSKSASLRGAGGSTPC 470
+ T A++ A S S S+RG GS PC
Sbjct: 340 FCTKCALYLCATASSSTSIRGVPGSIPC 367
>06_01_0483 + 3437707-3438342
Length = 211
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -1
Query: 213 SRGPTRWKR*LDKGSWMPAASWSTSSLYTIGSRPRTNEMENLSVGSLVPSNFVLR 49
+RG WKR ++KG ST+ L+ +G+ M+ G L+P+ F++R
Sbjct: 137 TRGCVAWKRGINKGGKRGCEGHSTAFLWALGNW----AMQAWWAGMLLPNRFLIR 187
>12_02_0254 + 16451683-16451985
Length = 100
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = -2
Query: 257 GRKRSRQNAAIGFFEAVARRDGSDNWTKVHGCQRRPGVLPASIRLAQGRERTKW 96
GRKRSRQ G E DG + W++ R V + LA G E + W
Sbjct: 22 GRKRSRQRKPAGGIEGEVEEDG-EAWSR-RRWSMRGSVGGVGVGLAGGGEASGW 73
>04_03_0806 + 19857675-19859135
Length = 486
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -2
Query: 263 HGGRKRSRQNAAIGFFEAVARRDGSDNWTKVHGCQRRPGVLPASIRLAQGRERTKWR 93
HG K R A+ FE + RD T V GC + G L ++RL R +R
Sbjct: 172 HGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGC-AKAGRLEKAVRLFDRMRREGYR 227
>07_03_0759 -
21299502-21299807,21299889-21300039,21300151-21300388,
21300729-21300939,21301018-21301133,21301388-21301519,
21302179-21303073
Length = 682
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -3
Query: 511 DDYNCHFWQLRESLQGVEPPAPRSEADFDPAAKYHIAADVEY 386
DDY + L+ S + V PAP + A FD A A EY
Sbjct: 146 DDYYVATYSLQRSSRLVSAPAPAAVAAFDAAVAMLANATAEY 187
>07_01_0644 + 4805262-4805712,4806173-4806356,4806511-4806613
Length = 245
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/35 (28%), Positives = 15/35 (42%)
Frame = -3
Query: 211 PWPDAMEAITGQRFMDASGVLEYFQPLYDWLKAEN 107
PWP+ A+ + G L+ YDW + N
Sbjct: 26 PWPEQFHAVVFTNLTGSGGRLQLIDLYYDWPRGRN 60
>10_08_0383 - 17424194-17425567
Length = 457
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 559 LLDLFRYGVFRGTTTVDDYNCHFWQLRESLQGVEPPAPRS 440
LL LFR + GT + + H LR L + PPAP +
Sbjct: 51 LLVLFRLALVAGTLRLASFADHDPALRSLLSRLSPPAPHA 90
>02_05_1023 + 33580416-33580904
Length = 162
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Frame = +1
Query: 187 SLPSRRATASKNPIAAFCRERFLPPC-CCKYRSLRAAC-----WSRRPRTPRR 327
++ RR TAS AA CR R PPC C R +RA C W R P+R
Sbjct: 107 AIARRRRTASG---AAACRWRSAPPCGAC--RDVRACCRAVEWWRRAKGGPQR 154
>09_06_0298 - 22117451-22118698
Length = 415
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 221 FFEAVARRDGSDNWTKVHGC 162
F+ A R G D WT VH C
Sbjct: 175 FYRAAILRAGDDAWTSVHTC 194
>07_03_1019 +
23337543-23337697,23338315-23338384,23338555-23338740,
23339006-23339080,23339161-23339240,23339357-23339483,
23340608-23340667,23341926-23341976,23342048-23342206,
23342528-23342660,23343097-23343166,23343516-23343570
Length = 406
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 374 VVSHVFHICSYMVLCSRIEVRFASWRRRFYALQG--LSELPEVTIVVVNCG 520
+V + ++CS +V E R++SWR + Y G L L V IVV+ G
Sbjct: 251 LVPAIIYVCSLIVSVILQETRWSSWRLKNYFSAGAMLWILSGVGIVVLPSG 301
>04_03_0436 + 15918144-15918377,15918514-15918717,15918813-15918911
Length = 178
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 316 YAVGDSSRLLSNCDIYNSTAAGNALGKMLQLGS 218
+AV LL DIY A LGK LQ+GS
Sbjct: 52 HAVAAGVTLLDTADIYGPHANEALLGKALQVGS 84
>02_02_0313 - 8866182-8866381,8866470-8866638
Length = 122
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/42 (30%), Positives = 16/42 (38%)
Frame = -1
Query: 246 LSAKCCNWVLRSRGPTRWKR*LDKGSWMPAASWSTSSLYTIG 121
L A CC + G T W DKG A W + +G
Sbjct: 12 LLAVCCAETILVAGATEWHVGDDKGWTFGVAGWENGKAFKVG 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,497,381
Number of Sequences: 37544
Number of extensions: 375765
Number of successful extensions: 1402
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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