Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_E11
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    28   0.075
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    28   0.075
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   6.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.7  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 27.9 bits (59), Expect = 0.075
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = -3

Query: 256 AGNALGKMLQLGSSKPWPDAMEAITGQRFMDASGVLEYFQPLYDWLKAENERNGEFVGWE 77
           A  A+   LQ  +   + D M ++T           EY++ ++D L  + ERNG      
Sbjct: 247 AEGAITVELQSENIPGFDDYMASLTPDTNRRNPWFSEYWEEVFDCL-LKKERNGPTQTTL 305

Query: 76  PSTVQFCTPNQKAAME 29
            +T  FC PN +   E
Sbjct: 306 NATTLFCPPNLRLTSE 321


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 27.9 bits (59), Expect = 0.075
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = -3

Query: 256 AGNALGKMLQLGSSKPWPDAMEAITGQRFMDASGVLEYFQPLYDWLKAENERNGEFVGWE 77
           A  A+   LQ  +   + D M ++T           EY++ ++D L  + ERNG      
Sbjct: 337 AEGAITVELQSENIPGFDDYMASLTPDTNRRNPWFSEYWEEVFDCL-LKKERNGPTQTTL 395

Query: 76  PSTVQFCTPNQKAAME 29
            +T  FC PN +   E
Sbjct: 396 NATTLFCPPNLRLTSE 411


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 339 RYASSPGSTRSATPAGCSQTAIFTT 265
           R  S  GST ++TPA  + T   TT
Sbjct: 203 RDESKAGSTDASTPATVTTTGATTT 227


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 18  KPVASIAAFWFGVQNWTVLGSQPTNSPFR 104
           K ++   A +FG+ + T LG    N P +
Sbjct: 306 KAISETGALFFGLVSDTALGCWNENRPLK 334


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 136 PLYDWLKAENER 101
           PLY W++++ ER
Sbjct: 259 PLYPWMRSQFER 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,130
Number of Sequences: 438
Number of extensions: 3455
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)