Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_E09
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   2.2  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    27   2.9  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   2.9  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   8.8  
SPAC1002.01 ||SPAC1610.05|conserved fungal protein|Schizosacchar...    25   8.8  

>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 188 CT*YLLDYLNSPI*IYVWNQKIYTISRYYYLFP 90
           C   LLD LNS   IY+ ++++  +++ + LFP
Sbjct: 526 CIVLLLDLLNSQKIIYLDDERVVLLNKIFSLFP 558


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 137 WNQKIYTISRYYYLFPAXXVCLG*FRQSDL 48
           WN K +T+S+ + L  A  +CLG     D+
Sbjct: 231 WNGKFFTLSQSFKLHLADALCLGVSANGDM 260


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 540  NVSNATSKSLSIFKDILRLLNLHT 611
            N+ + +S +LSI KD+  L +LHT
Sbjct: 1109 NIYSTSSTTLSILKDVQELKSLHT 1132


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 424 SQRQILEKSRLKILPLEKKNTLPGSATRILICESS 320
           SQ  +L K++ K+LPL +K T         +C  S
Sbjct: 312 SQSIVLLKNKKKLLPLSRKGTFAVIGPNAKVCNYS 346


>SPAC1002.01 ||SPAC1610.05|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 430 NDMKTYKHYM*NIGQSCHMFKLQSVNYLMFFFFT*DGMFQMPLP 561
           +D K +K  +   G+  H FK +  +++  F F  +    +PLP
Sbjct: 58  SDTKLWKRLLKITGKQAHQFKDKPFSHIFAFLFLHELSAILPLP 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,542
Number of Sequences: 5004
Number of extensions: 58643
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)