Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_E09
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68108-17|CAB60298.3| 1898|Caenorhabditis elegans Hypothetical p...    31   1.2  
Z50740-4|CAB60281.3| 1898|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AF044576-1|AAC38963.1| 1898|Caenorhabditis elegans phospholipase...    31   1.2  
X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic...    29   3.5  
X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic...    29   3.5  
U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated p...    29   3.5  

>Z68108-17|CAB60298.3| 1898|Caenorhabditis elegans Hypothetical
            protein F31B12.1a protein.
          Length = 1898

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +2

Query: 47   SNHFAEIIPNKRX---VLETNNNIWI*YKSFDSIHRFILVNSNSQVDIKYKKPFYVFRPI 217
            SN      PN R    VL  N N+W     + S+ RF+L N    V    +K F+    I
Sbjct: 1814 SNDLTPKYPNNRTTSRVLGQNENVWKAQSRWKSMGRFVLENRKDTVHATLEKEFHEMAKI 1873

Query: 218  L 220
            +
Sbjct: 1874 I 1874


>Z50740-4|CAB60281.3| 1898|Caenorhabditis elegans Hypothetical protein
            F31B12.1a protein.
          Length = 1898

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +2

Query: 47   SNHFAEIIPNKRX---VLETNNNIWI*YKSFDSIHRFILVNSNSQVDIKYKKPFYVFRPI 217
            SN      PN R    VL  N N+W     + S+ RF+L N    V    +K F+    I
Sbjct: 1814 SNDLTPKYPNNRTTSRVLGQNENVWKAQSRWKSMGRFVLENRKDTVHATLEKEFHEMAKI 1873

Query: 218  L 220
            +
Sbjct: 1874 I 1874


>AF044576-1|AAC38963.1| 1898|Caenorhabditis elegans phospholipase C
            PLC210 protein.
          Length = 1898

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = +2

Query: 47   SNHFAEIIPNKRX---VLETNNNIWI*YKSFDSIHRFILVNSNSQVDIKYKKPFYVFRPI 217
            SN      PN R    VL  N N+W     + S+ RF+L N    V    +K F+    I
Sbjct: 1814 SNDLTPKYPNNRTTSRVLGQNENVWKAQSRWKSMGRFVLENRKDTVHATLEKEFHEMAKI 1873

Query: 218  L 220
            +
Sbjct: 1874 I 1874


>X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
 Frame = +3

Query: 138 YIDSYW*IQIV-K*ILSTRNL-FMCLGLYYTSILVFFLLI----KKPLLISVYLCYKLYD 299
           YID  + +Q+  K +  T NL F C+G+ + +ILVF+L      K  L IS+ +   ++ 
Sbjct: 244 YIDVTYYLQLRRKPLFYTVNLVFPCVGISFLTILVFYLPSDSGEKVTLCISILVALTIFF 303

Query: 300 IINYNIIELSQINI 341
           ++   II  + I +
Sbjct: 304 LLLTEIIPATSITL 317


>X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
 Frame = +3

Query: 138 YIDSYW*IQIV-K*ILSTRNL-FMCLGLYYTSILVFFLLI----KKPLLISVYLCYKLYD 299
           YID  + +Q+  K +  T NL F C+G+ + +ILVF+L      K  L IS+ +   ++ 
Sbjct: 244 YIDVTYYLQLRRKPLFYTVNLVFPCVGISFLTILVFYLPSDSGEKVTLCISILVALTIFF 303

Query: 300 IINYNIIELSQINI 341
           ++   II  + I +
Sbjct: 304 LLLTEIIPATSITL 317


>U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated
           protein 38 protein.
          Length = 511

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
 Frame = +3

Query: 138 YIDSYW*IQIV-K*ILSTRNL-FMCLGLYYTSILVFFLLI----KKPLLISVYLCYKLYD 299
           YID  + +Q+  K +  T NL F C+G+ + +ILVF+L      K  L IS+ +   ++ 
Sbjct: 244 YIDVTYYLQLRRKPLFYTVNLVFPCVGISFLTILVFYLPSDSGEKVTLCISILVALTIFF 303

Query: 300 IINYNIIELSQINI 341
           ++   II  + I +
Sbjct: 304 LLLTEIIPATSITL 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,487,297
Number of Sequences: 27780
Number of extensions: 308625
Number of successful extensions: 719
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)