Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_E07
(388 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0955 + 29168771-29170507 29 1.7
07_03_0744 + 21121757-21122202,21122316-21122737,21122992-211231... 28 2.2
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 28 3.0
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973... 28 3.0
07_03_1792 + 29569623-29569737,29569848-29569981,29570117-295702... 27 3.9
11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,348... 27 5.2
07_03_0749 + 21212463-21212911,21212976-21213305,21213336-212134... 27 6.9
02_05_0225 + 26951993-26952165,26953169-26953567,26953644-269537... 27 6.9
>03_05_0955 + 29168771-29170507
Length = 578
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 262 QQTVRRYHGESHFKPPTMDELPVPKGSWQSHHDANQR 152
QQ +R+H H PP + P Q HH +Q+
Sbjct: 26 QQQQQRHHHHHHLPPPPPPQSMAPHHHQQKHHHHHQQ 62
>07_03_0744 +
21121757-21122202,21122316-21122737,21122992-21123117,
21123198-21123319,21123413-21123623,21123955-21124192,
21124284-21124431,21124547-21124879
Length = 681
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 151 DVGWHHGATAMSLWALVIHPW 213
DVGW + A A L ALV H W
Sbjct: 163 DVGWFNAAVAKILAALVEHTW 183
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 285 AKLHLGSSNKQCVATMAKVTSSPPPWMNYQCP 190
A L G+ + Q T A S PPPW NY P
Sbjct: 249 AILPWGAKHAQQHGTNAPKQSVPPPWFNYWHP 280
>03_02_0599 -
9730204-9730314,9730766-9731549,9731631-9732051,
9732139-9732385,9733730-9733921,9734071-9734204,
9734316-9734477,9736162-9736200,9737507-9737825
Length = 802
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 126 PKRSTALKRRWLASWCDCHEPLGTGNSSMVGGLK*LSP 239
P R LK W W CH G+G+ S + K P
Sbjct: 199 PIRKNELKNLWQHVWRRCHSSSGSGSESGIRTQKCTKP 236
>07_03_1792 +
29569623-29569737,29569848-29569981,29570117-29570284,
29572817-29573003,29573098-29573422,29573591-29574368,
29574897-29575022
Length = 610
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 126 PKRSTALKRRWLASWCDCHEPLGTGNSS 209
P R LK W W CH G+G+ S
Sbjct: 64 PIRKNELKNLWQHVWRRCHSSSGSGSES 91
>11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,
3489132-3491102,3492090-3492149,3492240-3492436,
3492678-3492963
Length = 1143
Score = 27.1 bits (57), Expect = 5.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 216 PPWMNYQCPKAHGSR 172
PPW + PKAHG+R
Sbjct: 1096 PPWSQEEDPKAHGAR 1110
>07_03_0749 +
21212463-21212911,21212976-21213305,21213336-21213436,
21213758-21213883,21213962-21214083,21214177-21214450,
21214767-21215004,21215101-21215248,21215400-21215732
Length = 706
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 151 DVGWHHGATAMSLWALVIHPW 213
+VGW + A A L ALV H W
Sbjct: 174 EVGWFNAAVAKILAALVEHAW 194
>02_05_0225 +
26951993-26952165,26953169-26953567,26953644-26953797,
26954069-26954240,26954494-26954567,26954667-26954763,
26954888-26955000,26955168-26955283,26955960-26956017,
26956512-26956664,26957377-26957460,26957579-26957734,
26958401-26958469,26959212-26959300,26959398-26959560,
26959740-26959874,26959950-26960055,26960143-26960237,
26960508-26960753,26961567-26961635,26961772-26961837,
26961838-26961983,26962348-26962449,26962752-26962899,
26964183-26964239,26964315-26964445,26964535-26964623,
26964694-26965007,26965084-26965176,26966504-26966578,
26966834-26966895,26967254-26967356,26967518-26967676,
26967790-26967930,26967981-26968084,26968146-26968260,
26969017-26969169,26969256-26969417
Length = 1646
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 104 IRRCKNIRTGLPQLLASTSTLDEAXQRITKAW 9
IRR KN++ L A T L EA + ++K W
Sbjct: 34 IRRQKNVQVALRAKWAGTPLLLEASELLSKEW 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,701,153
Number of Sequences: 37544
Number of extensions: 199555
Number of successful extensions: 546
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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