Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_E06
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   1.5  
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   1.5  
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    25   3.4  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   3.4  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    24   5.9  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    24   7.8  
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    24   7.8  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
 Frame = -2

Query: 152 HYCDCWC----KPGLIRDSIAHKCVKECPK 75
           HY  CWC    KP  +++ + H C   C K
Sbjct: 256 HYL-CWCGKQEKPEFVKNLVPHSCGDPCGK 284


>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 229 GGHSAELIPRHEIMNNKTNQRFILP--RFTHSDDSSAGRI 342
           GG    L+  HE MN K + R++ P  + ++ + S   RI
Sbjct: 128 GGRVVRLLGNHEFMNAKGDWRYVHPGDKASYPEPSEENRI 167


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 251 INSAECPPDQYDPGPN 204
           I+SAEC  ++  PGPN
Sbjct: 337 IDSAECDAEEPSPGPN 352


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -3

Query: 274 YSLFRVSELTLRNVHRTNTIRVQIAPSRQSVHYEAHTQTGNTTVTAGASLAS 119
           +S   VS   +   + + +  +  +PS +       TQT ++T T G+S+AS
Sbjct: 175 FSYTNVSSSVIATAYTSASSTILSSPSVEQSTPSIITQTESSTTTEGSSVAS 226


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 221 YDPGPNCAFETICALRSAHSNRKH 150
           Y  GP+  F T C ++  H+ ++H
Sbjct: 46  YFYGPSIDFPTTCKIKQVHTLQRH 69


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 227 DQYDPGPNCAFETICALRSAHSNRKH 150
           + Y  GP  +F   CA++  H  ++H
Sbjct: 44  EPYFNGPTTSFPESCAIKQVHLLQRH 69


>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 175 RNAQIVSKAQFGPGSYWSGGHSAELIPRHEIMNN 276
           RN+ + ++     G+  +  HS E  P HE+ +N
Sbjct: 96  RNSSLYARFPLSAGA-GASSHSEETTPSHEVTSN 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,440,922
Number of Sequences: 5004
Number of extensions: 26379
Number of successful extensions: 59
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)