Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_E06
(348 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247 29 1.3
10_02_0060 - 4808506-4808535,4808564-4809588,4810125-4810292,481... 28 2.3
12_02_0281 + 16744690-16744727,16744744-16745611,16746195-167467... 27 5.3
12_01_0981 + 9931542-9931606,9931779-9933105 27 5.3
04_01_0475 - 6196747-6197065,6197193-6197236,6198649-6198721,619... 27 5.3
03_05_0484 + 24808817-24809620,24810263-24810567,24811363-24812389 27 5.3
03_02_0880 - 12103703-12103726,12103938-12104210,12104389-121049... 27 5.3
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 26 9.3
07_03_0305 - 16475127-16476017,16476058-16478067 26 9.3
01_06_1221 - 35495427-35496542,35496650-35496839,35496988-354970... 26 9.3
>10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247
Length = 722
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 185 CALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKECPKYDEIL 60
C+ NR DC CKPG+ D A C ++ P +++
Sbjct: 347 CSSDGICKNRPGGYDCPCKPGMKGDGKAGTCTEKFPLVAKVI 388
>10_02_0060 -
4808506-4808535,4808564-4809588,4810125-4810292,
4811202-4811652
Length = 557
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 206 NCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKECP 78
NC+F ++C NR DC CK G+ D C + P
Sbjct: 163 NCSFNSVCV------NRPGGFDCPCKRGMTGDGKRGTCTENFP 199
>12_02_0281 +
16744690-16744727,16744744-16745611,16746195-16746725,
16747737-16748549
Length = 749
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 82 ARNTMKFWTSYIIPXSLLFGRIDDVI 5
AR ++F T+YI P S +FGR + VI
Sbjct: 180 ARIALQFRTAYIAPSSRVFGRGELVI 205
>12_01_0981 + 9931542-9931606,9931779-9933105
Length = 463
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 211 PGSYWSGGHSAELIPRHEIMNNKTNQRFILPRFTH 315
P +W GGH A P H+ N +Q P H
Sbjct: 129 PTHFWEGGHGAHPEPYHQPYNPYYHQEPFHPPHHH 163
>04_01_0475 -
6196747-6197065,6197193-6197236,6198649-6198721,
6198823-6198933,6199023-6199196,6199285-6199466
Length = 300
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 166 TQTGNTTVTAGASLAS*GTLSLTNV*KNARNTMKFWTSYI 47
T+ +T TAGAS S S TN+ N TMK + Y+
Sbjct: 253 TEAASTDSTAGASGTSSAGASGTNIDSNYYVTMKGYMEYM 292
>03_05_0484 + 24808817-24809620,24810263-24810567,24811363-24812389
Length = 711
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 82 ARNTMKFWTSYIIPXSLLFGRIDDVI 5
AR ++F T+YI P S +FGR + VI
Sbjct: 146 ARIVLQFRTAYIAPSSRVFGRGELVI 171
>03_02_0880 -
12103703-12103726,12103938-12104210,12104389-12104931,
12105017-12105374,12105696-12105994,12106116-12106189,
12106630-12106717,12107573-12107674,12107813-12107841,
12108118-12108235
Length = 635
Score = 26.6 bits (56), Expect = 5.3
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +1
Query: 166 CALRNAQI---VSKAQFGPGSY-WSGGHSAELIPRHEIMNNKTNQRFILPRFTHSDDSSA 333
C LR Q+ + KA + P S W G + + + N N +L +F H+DD ++
Sbjct: 487 CGLRMGQLRNLLGKATYDPQSCAWMSGVNVIDLEKWREHNVTENYLQLLKKFQHNDDEAS 546
Query: 334 GR 339
R
Sbjct: 547 VR 548
>07_03_1503 +
27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 251 INSAECPPDQYDPGPNCAFETI 186
+N+ PPD Y PNC ET+
Sbjct: 61 LNNKLGPPDYYPQTPNCPEETL 82
>07_03_0305 - 16475127-16476017,16476058-16478067
Length = 966
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = +2
Query: 302 LVSLTAMTHRPAE 340
LV+LTAM+HRPA+
Sbjct: 695 LVNLTAMSHRPAD 707
>01_06_1221 -
35495427-35496542,35496650-35496839,35496988-35497061,
35497407-35497573,35497685-35498018
Length = 626
Score = 25.8 bits (54), Expect = 9.3
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -2
Query: 329 DESSL*VKRGKMNLWFVLLFIISCLGINSAECPPDQ--YDPGPNCAFETICALRSAHSNR 156
D+SS V + F++S +G+ A P + Y GPNC F + + NR
Sbjct: 133 DDSSASVSEPEFGRMMAFFFLVSFVGL-LAIVPMRKWFYTGGPNCGFTSFPTFGLSAFNR 191
Query: 155 KHY 147
Y
Sbjct: 192 GFY 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,320,565
Number of Sequences: 37544
Number of extensions: 179400
Number of successful extensions: 406
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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