Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_E04
(560 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 32 0.32
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 31 0.43
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 31 0.43
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 31 0.43
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 31 0.43
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 31 0.43
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 0.57
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 31 0.57
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 31 0.57
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 31 0.75
AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical ... 30 1.3
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 29 2.3
Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical pr... 28 4.0
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 28 5.3
U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical pr... 28 5.3
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 28 5.3
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z36238-1|CAA85275.2| 400|Caenorhabditis elegans Hypothetical pr... 27 7.0
AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical... 27 7.0
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 27 9.2
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 31.9 bits (69), Expect = 0.32
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -3
Query: 297 SHHPECPHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDR 130
+HHP P P Q + E P +P+ + P TA A+P AT PT DP +
Sbjct: 215 AHHP--PAPPIRQAAHAAESSPPPIPQRKSSAPAPTA----AAPPATKEPT-DPKK 263
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.5 bits (68), Expect = 0.43
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +2
Query: 137 GSTVGGGVACGDASSTCAVCVGNCGRASGTTC-GPTSPSEEHWEERGCGHSG 289
G GGG CG C G CG G C G +S GCG G
Sbjct: 108 GGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGG 159
Score = 31.5 bits (68), Expect = 0.43
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 279 PHPRSSQCSSDG-EVGPQVVPEARPQLPTHTAQVEEASPQATP 154
P P ++ SS G G + PEA P P+ EA+P+A P
Sbjct: 456 PAPEAAPASSGGYSGGSEAAPEAAPAAPSGGYSGSEAAPEAAP 498
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 252 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 154
S G G + PEA P P+ EA+P+A P
Sbjct: 484 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 516
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 252 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 154
S G G + PEA P P+ EA+P+A P
Sbjct: 502 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 534
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 252 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 154
S G G + PEA P P+ EA+P+A P
Sbjct: 520 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 552
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 252 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 154
S G G + PEA P P+ EA+P+A P
Sbjct: 538 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 570
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = +2
Query: 137 GSTVGGGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEEHWEERGC--GHSGWC 295
G GGG CG C G CG G CG GC G SG C
Sbjct: 94 GGGCGGGGGCGGGGGGCGGGGGGCG-GGGGGCGGGGGGCGGGGGGGCGGGSSGGC 147
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.5 bits (68), Expect = 0.43
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +2
Query: 137 GSTVGGGVACGDASSTCAVCVGNCGRASGTTC-GPTSPSEEHWEERGCGHSG 289
G GGG CG C G CG G C G +S GCG G
Sbjct: 108 GGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGG 159
Score = 31.5 bits (68), Expect = 0.43
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 279 PHPRSSQCSSDG-EVGPQVVPEARPQLPTHTAQVEEASPQATP 154
P P ++ SS G G + PEA P P+ EA+P+A P
Sbjct: 456 PAPEAAPASSGGYSGGSEAAPEAAPAAPSGGYSGSEAAPEAAP 498
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 252 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 154
S G G + PEA P P+ EA+P+A P
Sbjct: 484 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 516
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 252 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 154
S G G + PEA P P+ EA+P+A P
Sbjct: 502 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 534
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 252 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 154
S G G + PEA P P+ EA+P+A P
Sbjct: 520 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 552
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 252 SDGEVGPQVVPEARPQLPTHTAQVEEASPQATP 154
S G G + PEA P P+ EA+P+A P
Sbjct: 538 SGGYSGSEAAPEAAPAAPSGGYSGSEAAPEAAP 570
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = +2
Query: 137 GSTVGGGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEEHWEERGC--GHSGWC 295
G GGG CG C G CG G CG GC G SG C
Sbjct: 94 GGGCGGGGGCGGGGGGCGGGGGGCG-GGGGGCGGGGGGCGGGGGGGCGGGSSGGC 147
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 31.5 bits (68), Expect = 0.43
Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Frame = -3
Query: 300 TSHHPECPHPRSSQCSSDGEVGPQVVPE-ARPQLPTHTAQVEEASPQAT-----PPPTVD 139
T+H P P S CS V P + P + + SP T PPP
Sbjct: 216 TTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPPPPQ 275
Query: 138 PDRMKNCKP 112
P K KP
Sbjct: 276 PPTKKGMKP 284
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 31.5 bits (68), Expect = 0.43
Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Frame = -3
Query: 300 TSHHPECPHPRSSQCSSDGEVGPQVVPE-ARPQLPTHTAQVEEASPQAT-----PPPTVD 139
T+H P P S CS V P + P + + SP T PPP
Sbjct: 216 TTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPPPPQ 275
Query: 138 PDRMKNCKP 112
P K KP
Sbjct: 276 PPTKKGMKP 284
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 31.5 bits (68), Expect = 0.43
Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Frame = -3
Query: 300 TSHHPECPHPRSSQCSSDGEVGPQVVPE-ARPQLPTHTAQVEEASPQAT-----PPPTVD 139
T+H P P S CS V P + P + + SP T PPP
Sbjct: 216 TTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPPPPQ 275
Query: 138 PDRMKNCKP 112
P K KP
Sbjct: 276 PPTKKGMKP 284
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 31.1 bits (67), Expect = 0.57
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +2
Query: 137 GSTVGGGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEEHWEERGCGHSG 289
G GGG CG C G CG G G P GCG G
Sbjct: 76 GGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGG 126
Score = 30.3 bits (65), Expect = 0.99
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +2
Query: 137 GSTVGGGVACGDASSTCAVCVGNCGRASGTTCG 235
G GGG CG C G CG G CG
Sbjct: 147 GGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCG 179
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/56 (33%), Positives = 19/56 (33%)
Frame = +2
Query: 122 FFIRSGSTVGGGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEEHWEERGCGHSG 289
F SG GGG CG C G G G C P P GCG G
Sbjct: 18 FLFPSGGGGGGGGGCGGGCGGGGGCGGGGGCGGG--CAPPPPPPAC--GGGCGGGG 69
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical
protein C27H6.1 protein.
Length = 1657
Score = 31.1 bits (67), Expect = 0.57
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -3
Query: 279 PHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDP 136
P P +S SS G P P ARP+ P +A+ PPP P
Sbjct: 673 PTPEAS--SSTGTSAPARPPPARPEAPKKDETAVDAAAPPRPPPAARP 718
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 137 GSTVGGGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEEH 259
G GGG +CG ++ C G G S + C P + + H
Sbjct: 2136 GGCSGGGNSCGGGCNSGGSCGGGGGGCSSSCCQPQTSATSH 2176
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 30.7 bits (66), Expect = 0.75
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = -3
Query: 303 MTSHHPECPHPRSSQCSSDGEVGPQVVPEARP--QLPTHTAQV--EEASPQA--TPPPTV 142
+T+ P P P + + + P PE P Q+P TAQ+ E A P+A P PT
Sbjct: 372 LTTPPPPAPPPPAPAVPEEAQA-PTPAPEEAPEAQIPAETAQIPPENAVPEAPEEPAPTT 430
Query: 141 DP 136
P
Sbjct: 431 TP 432
>AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical
protein W08E12.2 protein.
Length = 120
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +2
Query: 134 SGSTVGGGVACGDASSTCAVCVG-NCGRASGTTCGP 238
S GGG G C C G NCG +G CGP
Sbjct: 17 SAQCFGGGCGGGCFGGNCGGCSGNNCG-CNGNNCGP 51
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Frame = -3
Query: 288 PECPHPRSSQCSSDGEVGPQVVPEARP--QLPTHTAQV--EEASPQA--TPPPTVDP 136
P P P + + + P PE P Q+P TAQ+ E A P+A P PT P
Sbjct: 389 PPAPPPPAPAVPEEAQA-PTPAPEEAPEAQIPAETAQIPPENAVPEAPEEPAPTTTP 444
>Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical
protein B0393.4 protein.
Length = 803
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 222 PEARPQLPTHTAQVEEASPQATPPP 148
P P L T T +E+ P TPPP
Sbjct: 191 PSEPPLLTTPTTPIEDPEPYVTPPP 215
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 234 PQVVPEARPQLPTHTAQVEEASPQATPPPT 145
P VP RP+ P + E+ Q T PPT
Sbjct: 4536 PDFVPPERPETPETVLEEEKPLNQETSPPT 4565
>U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical
protein F35A5.4 protein.
Length = 524
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 225 VPEARPQ-LPTHTAQVEEASPQATPPPTVDPDRMKNCKP 112
+P+ P+ LPT Q++ + P P P D M +C P
Sbjct: 234 IPQCMPRCLPTCIQQIQISVPLPPPAPRCDSMCMPSCSP 272
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 234 PQVVPEARPQLPTHTAQVEEASPQATPPPT 145
P VP RP+ P + E+ Q T PPT
Sbjct: 4528 PDFVPPERPETPETVLEEEKPLNQETSPPT 4557
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 210 PQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP*T 106
PQ+P Q + +P+ T PPT P N P T
Sbjct: 762 PQVPLPVVQTTQTAPKPTLPPTTLPVLTTNKTPRT 796
>Z36238-1|CAA85275.2| 400|Caenorhabditis elegans Hypothetical
protein R74.2 protein.
Length = 400
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 137 GSTVGGGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEE 256
G GGG G S G CG SGT CG + E+
Sbjct: 199 GGGCGGGYPQGYGSYAGYGNSGGCGGGSGTGCGGYNDDED 238
>AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical
protein Y73B3A.5 protein.
Length = 310
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/66 (27%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Frame = -3
Query: 300 TSHHPECPHPRSSQCSSDGEVGPQVVPE-ARPQLPTHTAQVEEASPQATPPPTV--DPDR 130
T+H P P S CS V P + P + + S TP T P
Sbjct: 121 TTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRSLSSSTTPSTTAPPQPPT 180
Query: 129 MKNCKP 112
K KP
Sbjct: 181 KKGMKP 186
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/51 (27%), Positives = 18/51 (35%)
Frame = -3
Query: 288 PECPHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDP 136
P P P + + PQ P+ PQ E P+ P P V P
Sbjct: 98 PPPPPPTQPEPEPEPRPEPQPEPQPEPQPEPQPEPQPEPHPEPAPEPIVKP 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,908,333
Number of Sequences: 27780
Number of extensions: 180523
Number of successful extensions: 979
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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