Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_E03
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0300 - 3257584-3258825 33 0.39
11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644 32 0.51
10_02_0198 - 6611775-6612611 32 0.51
07_01_1086 - 9930311-9931993 32 0.51
05_03_0216 + 10370531-10371922,10378656-10378808 32 0.51
04_01_0187 - 2153546-2154520,2154581-2155858 32 0.51
12_02_0637 - 21437244-21438080 32 0.67
12_02_0214 + 15750620-15751273 31 1.2
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 31 1.2
10_05_0084 + 8956637-8956681,8957722-8957856,8958040-8958834 30 2.1
08_01_0749 + 7063297-7064370 30 2.1
08_01_0732 - 6672839-6672937,6672990-6673571,6673755-6674417 30 2.1
03_05_0186 + 21731294-21732277 29 3.6
08_02_0235 + 14627648-14628889 29 4.7
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675... 28 8.3
07_01_1133 - 10550799-10551137,10552195-10552254,10555693-105574... 28 8.3
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123... 28 8.3
>10_01_0300 - 3257584-3258825
Length = 413
Score = 32.7 bits (71), Expect = 0.39
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Frame = -1
Query: 807 ELRKEAKXXIFXVQEXXRX------NYXKXMKECTIYKEGDLVAVKRT------QFGTGM 664
++ +EA+ + +QE R +Y + ++EGD V ++ T F T
Sbjct: 226 DILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHHFHTNG 285
Query: 663 KLKPKFLEPYRIVKVKRKSRYNVE 592
KL P+F+ PY+IV + + Y +E
Sbjct: 286 KLAPRFVGPYKIVSRRGEVAYQLE 309
>11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644
Length = 581
Score = 32.3 bits (70), Expect = 0.51
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Frame = -1
Query: 807 ELRKEAKXXIFXVQEXXRX------NYXKXMKECTIYKEGDLVAVKRT------QFGTGM 664
++ +EA+ + +QE R +Y + ++EGD V ++ T +F T
Sbjct: 394 DILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKG 453
Query: 663 KLKPKFLEPYRIVKVKRKSRYNVE 592
KL P+F+ PY+IV + + Y +E
Sbjct: 454 KLAPRFVGPYKIVSRRGEVAYQLE 477
>10_02_0198 - 6611775-6612611
Length = 278
Score = 32.3 bits (70), Expect = 0.51
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Frame = -1
Query: 807 ELRKEAKXXIFXVQEXXRX------NYXKXMKECTIYKEGDLVAVKRT------QFGTGM 664
++ +EA+ + +QE R +Y + ++EGD V ++ T +F T
Sbjct: 91 DILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKG 150
Query: 663 KLKPKFLEPYRIVKVKRKSRYNVE 592
KL P+F+ PY+IV + + Y +E
Sbjct: 151 KLAPRFVGPYKIVSRRGEVAYQLE 174
>07_01_1086 - 9930311-9931993
Length = 560
Score = 32.3 bits (70), Expect = 0.51
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Frame = -1
Query: 807 ELRKEAKXXIFXVQEXXRX------NYXKXMKECTIYKEGDLVAVKRTQ------FGTGM 664
++ +EA+ + +QE R +Y + ++EGD V ++ T F T
Sbjct: 373 DILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHCFHTKG 432
Query: 663 KLKPKFLEPYRIVKVKRKSRYNVE 592
KL P+F+ PY+IV+ + + Y +E
Sbjct: 433 KLAPRFVGPYKIVRRRGEVAYQLE 456
>05_03_0216 + 10370531-10371922,10378656-10378808
Length = 514
Score = 32.3 bits (70), Expect = 0.51
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Frame = -1
Query: 807 ELRKEAKXXIFXVQEXXRX------NYXKXMKECTIYKEGDLVAVKRT------QFGTGM 664
++ +EA+ + +QE R +Y + ++EGD V ++ T +F T
Sbjct: 359 DILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKG 418
Query: 663 KLKPKFLEPYRIVKVKRKSRYNVE 592
KL P+F+ PY+IV + + Y +E
Sbjct: 419 KLAPRFVGPYKIVSRRGEVAYQLE 442
>04_01_0187 - 2153546-2154520,2154581-2155858
Length = 750
Score = 32.3 bits (70), Expect = 0.51
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Frame = -1
Query: 807 ELRKEAKXXIFXVQEXXRX------NYXKXMKECTIYKEGDLVAVKRT------QFGTGM 664
++ +EA+ + +QE R +Y + ++EGD V ++ T +F T
Sbjct: 609 DILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPIRGVHRFHTKG 668
Query: 663 KLKPKFLEPYRIVKVKRKSRYNVE 592
KL P+F+ PY+IV + + Y +E
Sbjct: 669 KLAPRFVGPYKIVSRRGEVAYQLE 692
>12_02_0637 - 21437244-21438080
Length = 278
Score = 31.9 bits (69), Expect = 0.67
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Frame = -1
Query: 807 ELRKEAKXXIFXVQEXXRX------NYXKXMKECTIYKEGDLVAVKRT------QFGTGM 664
++ +EA+ + +QE R +Y + ++EGD V ++ T +F T
Sbjct: 91 DILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTMG 150
Query: 663 KLKPKFLEPYRIVKVKRKSRYNVE 592
KL P+F+ PY+IV + + Y +E
Sbjct: 151 KLAPRFVGPYKIVSRRGEVAYQLE 174
>12_02_0214 + 15750620-15751273
Length = 217
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Frame = -1
Query: 807 ELRKEAKXXIFXVQEXXRX------NYXKXMKECTIYKEGDLVAVKRT------QFGTGM 664
++ +EA+ + +QE R +Y + ++EGD V ++ T +F T
Sbjct: 30 DILREAEEKVKIIQERLRVAQSRQKSYADNRRRDLAFEEGDYVYLRVTPLRGVHRFQTKG 89
Query: 663 KLKPKFLEPYRIVKVKRKSRYNVE 592
KL P+F+ P++IV + + Y +E
Sbjct: 90 KLAPRFVGPFKIVSRRGEVAYQLE 113
>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Frame = -1
Query: 807 ELRKEAKXXIFXVQEXXRX------NYXKXMKECTIYKEGDLVAVKRT------QFGTGM 664
++ +EA+ + +QE R +Y + ++EGD V ++ T +F T
Sbjct: 1489 DILREAEEKVKIIQERLRVAQSRQKSYADNRRRDLAFEEGDYVYLRVTPLRGVHRFQTKG 1548
Query: 663 KLKPKFLEPYRIVKVKRKSRYNVE 592
KL P+F+ P++IV + + Y +E
Sbjct: 1549 KLAPRFVGPFKIVSRRGEVAYQLE 1572
>10_05_0084 + 8956637-8956681,8957722-8957856,8958040-8958834
Length = 324
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Frame = -1
Query: 717 YKEGDLVAVKRT------QFGTGMKLKPKFLEPYRIVKVKRKSRYNVE 592
++EGD V ++ T +F T KL P+F+ PY+IV + + Y +E
Sbjct: 173 FEEGDYVYLRVTPLRGVHRFHTKGKLAPRFVGPYKIVSRRGEVAYQLE 220
>08_01_0749 + 7063297-7064370
Length = 357
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = -1
Query: 771 VQEXXRXNYXKXMKECTIYKEGDLVAVKRT------QFGTGMKLKPKFLEPYRIVKVKRK 610
V + + +Y + ++EGD V ++ T +F T KL P+F+ P++IV + +
Sbjct: 188 VAQSRQKSYADNRRRDLAFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPFKIVSRRGE 247
Query: 609 SRYNVE 592
Y +E
Sbjct: 248 VAYQLE 253
>08_01_0732 - 6672839-6672937,6672990-6673571,6673755-6674417
Length = 447
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Frame = -1
Query: 807 ELRKEAKXXIFXVQEXXRX------NYXKXMKECTIYKEGDLVAVKRT------QFGTGM 664
++ +EA+ + +QE R +Y ++EGD V ++ T +F T
Sbjct: 298 DILREAEEKVKIIQERLRVAQSRHKSYADNRYRDLSFEEGDYVYLRVTPFRGVHRFHTKG 357
Query: 663 KLKPKFLEPYRIVKVKRKSRYNVE 592
KL P+F+ PY+IV + + Y +E
Sbjct: 358 KLAPRFVGPYKIVSRRVEVAYQLE 381
>03_05_0186 + 21731294-21732277
Length = 327
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 12/84 (14%)
Frame = -1
Query: 807 ELRKEAKXXIFXVQEXXRX------NYXKXMKECTIYKEGDLVAVKRT------QFGTGM 664
++ +EA+ + +QE R Y + +++GD V ++ T +F T
Sbjct: 226 DILREAEEKVKIIQERLRIAQCRHKRYADNRRRDLSFEKGDHVYLRVTPLRGVYRFHTKG 285
Query: 663 KLKPKFLEPYRIVKVKRKSRYNVE 592
KL P+F+ PY+IV + + Y +E
Sbjct: 286 KLAPRFVGPYKIVSRRGEVAYQLE 309
>08_02_0235 + 14627648-14628889
Length = 413
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Frame = -1
Query: 807 ELRKEAKXXIFXVQEXXRX------NYXKXMKECTIYKEGDLVAVKRTQF-GTGM----- 664
++ +EA+ + +QE R +Y + + EGD V ++ T F G
Sbjct: 226 DILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFDEGDYVYLRVTPFRGVHRFHIKG 285
Query: 663 KLKPKFLEPYRIVKVKRKSRYNVE 592
KL P+F+ PY+IV + + Y +E
Sbjct: 286 KLAPRFVGPYKIVSRRGEVAYQLE 309
>08_02_0167 - 13564466-13566227,13566361-13566644,13566684-13567540,
13567684-13567957,13567973-13568218
Length = 1140
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 681 QFGTGMKLKPKFLEPYRIVKVKRKSRYNVE 592
+F T KL P+++ P+RI+ +R+ Y +E
Sbjct: 1034 RFQTKGKLAPRYVGPFRIIARRREVAYQLE 1063
>07_01_1133 -
10550799-10551137,10552195-10552254,10555693-10557401,
10557534-10557616,10577533-10578074
Length = 910
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Frame = -1
Query: 717 YKEGDLVAVKRT------QFGTGMKLKPKFLEPYRIVKVKRKSRYNVE 592
++EGD V ++ T +F T KL P+F+ P++IV + + Y +E
Sbjct: 681 FEEGDYVYLQVTPLRGVHRFQTKGKLAPRFVGPFKIVSRRGEVAYQLE 728
>01_06_0847 +
32411521-32411619,32411737-32411851,32412292-32412375,
32412430-32413478,32414690-32416371,32416477-32416586,
32417634-32418430,32418839-32418951,32419147-32419194,
32419425-32419652,32419732-32419829,32419967-32420019
Length = 1491
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +3
Query: 126 TNINLHPSYHAFNKTSFPHSAVLHVSLSSELPFYNTNILQHRESY 260
T + HP H F + PH++ + L S + +++++ + SY
Sbjct: 448 TELKRHPEIHNFEQNLLPHNSAPYFGLPSGIVPFSSSVPRDYTSY 492
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,111,638
Number of Sequences: 37544
Number of extensions: 267739
Number of successful extensions: 565
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -