Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_E03
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   6.3  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   8.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   8.3  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 650 FGFSFIPVPN*VLFTATKSPSLYIVH 727
           FG +  PV N + ++   S SLY V+
Sbjct: 255 FGMALSPVTNNLYYSPLTSHSLYYVN 280


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -3

Query: 736 NERMYYIQGRRLSSCEKDSVWYRNETETKVFGTISN 629
           NER Y   G+      +D +      E K+  ++SN
Sbjct: 274 NEREYRKYGKTSKERSRDRMERERSKEPKIISSLSN 309


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 650 FGFSFIPVPN*VLFTATKSPSLYIVHS 730
           FG +  P+ N + ++   S SLY V++
Sbjct: 255 FGMALSPMTNNLYYSPLSSRSLYYVNT 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,051
Number of Sequences: 438
Number of extensions: 3639
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)