Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_E02
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75554-6|CAA99958.1|  304|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U39998-3|AAO38584.1|  460|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U39998-2|AAL00881.1|  484|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U39998-1|AAO38583.1|  475|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z75554-6|CAA99958.1|  304|Caenorhabditis elegans Hypothetical
           protein ZC455.7 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 218 YIIILNLAQVGSTLYIHIIVSLN*FYFNLEDAIFFNCF 331
           YIII+ +A + + L + I+   N F+ NL+  I+F  F
Sbjct: 7   YIIIVLIASIATILCLLIVGRSNTFHPNLQGPIWFTAF 44


>U39998-3|AAO38584.1|  460|Caenorhabditis elegans Hypothetical
           protein ZK622.3d protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +3

Query: 459 LKRNTISVTVVFHGPAVGSLNSSELHLYTYIQKIVLCCSWYTTPNLVHTKTKCSQQNSSR 638
           LK  + SV +VF    +  L+  E      ++ I  C  W  +  +VH +  CS+ ++ R
Sbjct: 108 LKMESNSVDLVFTNWLMMYLSDEET-----VEFIFNCMRWLRSHGIVHLRESCSEPSTGR 162

Query: 639 GRDK 650
            + K
Sbjct: 163 SKAK 166


>U39998-2|AAL00881.1|  484|Caenorhabditis elegans Hypothetical
           protein ZK622.3b protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +3

Query: 459 LKRNTISVTVVFHGPAVGSLNSSELHLYTYIQKIVLCCSWYTTPNLVHTKTKCSQQNSSR 638
           LK  + SV +VF    +  L+  E      ++ I  C  W  +  +VH +  CS+ ++ R
Sbjct: 132 LKMESNSVDLVFTNWLMMYLSDEET-----VEFIFNCMRWLRSHGIVHLRESCSEPSTGR 186

Query: 639 GRDK 650
            + K
Sbjct: 187 SKAK 190


>U39998-1|AAO38583.1|  475|Caenorhabditis elegans Hypothetical
           protein ZK622.3a protein.
          Length = 475

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +3

Query: 459 LKRNTISVTVVFHGPAVGSLNSSELHLYTYIQKIVLCCSWYTTPNLVHTKTKCSQQNSSR 638
           LK  + SV +VF    +  L+  E      ++ I  C  W  +  +VH +  CS+ ++ R
Sbjct: 123 LKMESNSVDLVFTNWLMMYLSDEET-----VEFIFNCMRWLRSHGIVHLRESCSEPSTGR 177

Query: 639 GRDK 650
            + K
Sbjct: 178 SKAK 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,297,675
Number of Sequences: 27780
Number of extensions: 367035
Number of successful extensions: 749
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)