Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_D24
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    27   3.3  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   3.3  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    26   4.3  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   10.0 

>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 529 PTFVHSRLTSLLYELY 482
           PT+V S +T LL+ELY
Sbjct: 127 PTYVRSTMTELLFELY 142


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -2

Query: 649 TEYYVAEQTVILLVKTDMMDIQYSRLCRPIRINIKDVILCPTFVHSRLTSLLYELY 482
           T  YVAEQ  I+   T ++DI++         +  D I  P   H  L + LYE Y
Sbjct: 714 TAVYVAEQVGIVEKPTLVLDIKHENEKILEWKSTDDTINLPMNPHKSLEASLYEKY 769


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 249 SSYTYFRYVV*NSDLSRLVQGSYQFVYGESISNVRKSEI-FKALNLKQKKKMN 404
           +S+TY  Y     ++  L +    ++    ++N+  S   FKAL++K+KK  N
Sbjct: 93  NSHTYIMYGKSMVEIGHLQEEFMDYLNNSFLANLENSLAEFKALDVKEKKMEN 145


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 601 DMMDIQYSRLCRPIRINIKDVILCPTFVH 515
           ++M      LCR +   I ++ILCP + +
Sbjct: 641 ELMSENMQELCRILGKRIPEIILCPIYAN 669


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,983
Number of Sequences: 5004
Number of extensions: 47175
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)