Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_D22
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    33   0.038
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.5  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   4.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.8  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    26   5.8  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   7.7  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   7.7  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   7.7  

>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 33.1 bits (72), Expect = 0.038
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = -1

Query: 572 EXRDXDKSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTSKK 393
           E  +   +PP    PP     S+Q DD  Y   P   G  FA L+   + ++PSAS S +
Sbjct: 6   EHIEYPNTPPLH-SPPESHTFSSQTDD-SYFHKPSSTGL-FATLVADTNSSVPSASRSPE 62

Query: 392 QLPIPIKNDGSFLEMFKK 339
            +     ND + +  +++
Sbjct: 63  SIASSQSNDSAAIPSYRR 80


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 449 AELLTPVDQAIPSASTSKKQLPIP 378
           + L TP+   +P  STS   +PIP
Sbjct: 128 SSLSTPITPTVPPTSTSSTSIPIP 151



 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 449 AELLTPVDQAIPSASTSKKQLPIP 378
           + L TP+   +P  STS   +PIP
Sbjct: 185 SSLSTPITPTVPPTSTSSTSIPIP 208



 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 449 AELLTPVDQAIPSASTSKKQLPIP 378
           + L TP+   +P  STS   +PIP
Sbjct: 241 SSLSTPITPTVPPTSTSSTSIPIP 264


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 479 DPPEVEGPNFAELLTPVDQA-IPSASTSKKQLPIPIKNDG 363
           DP  ++  + A  ++P D + +    TS   +PIPIKN G
Sbjct: 111 DPINIDELDRAYAVSPSDTSNLLHPPTSSSSIPIPIKNAG 150


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 551 SPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAE 444
           SPP   +PP  A  +T +   +Y  PP    P   E
Sbjct: 166 SPPPSFQPPSAAAPATSLPS-DYNPPPPPPPPPAVE 200


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -1

Query: 584 RSRQEXRDXDKSPPKEI--KPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPS 411
           ++R    + + S PK+I  K  P +  ++ I    YGD P    P+      P+    P 
Sbjct: 127 QTRGAQSEVNLSTPKQIYSKHSPPSTSTSSIVSSSYGDAPSYLAPSKPNRSPPLKPEDPF 186

Query: 410 AS 405
           AS
Sbjct: 187 AS 188


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 416 PSASTSKKQLPIPIKNDGSFLEMFKKMQEV 327
           PSAS S  Q P  + NDGS L      Q++
Sbjct: 108 PSASFSTSQHPSQVYNDGSTLNSNNTTQQL 137


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 69  N*EITMLFDEWSCLALLFTRRFSVLLNFLHIKGPCIFRSVVYTLFVNSLGLL 224
           N  I  L++++    +L  +    +  F  +    +F  V+Y L+ NSLGL+
Sbjct: 326 NSRIYRLYNDFIVNGVLADKESRSIFYFFLLNVSYMFVQVIYGLWTNSLGLI 377


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 423 LIDRCQ*FCKIRAFHFRGITILNIINLCGLNSSR 524
           L +RC   C I   H R  T++ I + C   SS+
Sbjct: 22  LCERCDEKCPICDSHVRPTTLVRICDECAFGSSQ 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,061
Number of Sequences: 5004
Number of extensions: 46914
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)