Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_D22
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 30 2.0
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962... 29 2.6
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 29 2.6
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 29 2.6
12_02_0937 - 24568475-24569145,24569215-24569319,24569419-245699... 29 3.4
08_02_0937 + 22801526-22802461 29 3.4
11_06_0610 - 25449085-25453284 29 4.5
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596... 29 4.5
02_05_0826 - 32044850-32044972,32045061-32045164,32045303-32045492 29 4.5
01_01_0531 - 3892738-3892757,3893083-3893111,3893330-3893355,389... 29 4.5
02_05_0463 - 29248675-29249391,29250024-29250142,29250276-292504... 28 6.0
03_03_0257 + 15903723-15905201 28 7.9
01_06_1224 - 35508842-35510404 28 7.9
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -1
Query: 521 GAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTSKKQLPIPIKNDGS 360
G V + +I+ D P+V + P+DQ +P AS+ L + DGS
Sbjct: 552 GEVVEDNLSNIKTFDIPKVVLRETSPCALPIDQRVPHASSKDHNLKSKVLKDGS 605
>06_03_0138 +
17093196-17093325,17095704-17095804,17096224-17096292,
17096403-17097650,17097763-17097871,17099459-17099655,
17099732-17099842,17099927-17100079
Length = 705
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -1
Query: 545 PKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTSK-KQLPIP 378
P + PP +EST G P + N + P+D +PSAS++K +P+P
Sbjct: 327 PPSVNPPVSTIESTMSQS--QGISPLM---NNKPVSLPLDSTVPSASSNKPMNIPVP 378
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 476 PPEVEGPNFAELLTPVDQAIPSASTSKKQLPI 381
PP EG N A +TP D+ S S S +Q P+
Sbjct: 825 PPGAEGLNSAPRVTPKDKEFLSLSISSQQSPV 856
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = -1
Query: 554 KSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTSKKQLPIP 378
+ P K PPP +S ++ PP++ PN A+ P A A KK P P
Sbjct: 95 QKPSKVSPPPPPPQKSAKVSPPPAAKPPKLSPPNLAKATKPSRLA---AKPPKKAAPGP 150
>12_02_0937 -
24568475-24569145,24569215-24569319,24569419-24569991,
24570480-24570780,24570867-24572039,24572260-24572328
Length = 963
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 266 GKRRGGRVLKTGLVKKAKAIDEQCVDNTPKDAWSLYMQEVKK 141
G G R ++TG +K D + N P+DA S E KK
Sbjct: 4 GSSEGSRDMRTGYLKTTAHNDAEPTGNLPEDAQSTNNGEAKK 45
>08_02_0937 + 22801526-22802461
Length = 311
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 572 EXRDXDKSPPKEIKPPPGAVESTQIDDIEYGD 477
E + SPP PPPG + + DD E GD
Sbjct: 65 EEEEEVSSPPPPPPPPPGFLSDSSSDDEEGGD 96
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/57 (31%), Positives = 22/57 (38%)
Frame = -1
Query: 548 PPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTSKKQLPIP 378
PP E PPP +S E PPE + P TP + PS + P P
Sbjct: 868 PPPEKSPPPPETKSPPTLTPEISPPPEGKSP---PSHTPESSSPPSKESEPPPTPTP 921
>09_02_0221 +
5962606-5963197,5963711-5963837,5963994-5964100,
5964185-5964328,5964700-5964822,5964921-5965103,
5965540-5965718,5965797-5965823
Length = 493
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -1
Query: 371 NDGSFLEMFKKMQE 330
NDGSF+E FK+MQE
Sbjct: 9 NDGSFMERFKQMQE 22
>02_05_0826 - 32044850-32044972,32045061-32045164,32045303-32045492
Length = 138
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -1
Query: 536 IKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSA 408
++PPP I +G P EVE P F + + + I A
Sbjct: 43 VQPPPSIAAGLNPGPIPFGGPSEVEVPAFTQAIEAHQRRITQA 85
>01_01_0531 -
3892738-3892757,3893083-3893111,3893330-3893355,
3893639-3893767,3893884-3894151,3894355-3894694,
3894925-3895045,3895135-3895230,3895604-3895777,
3895902-3896068,3896675-3896840,3896915-3897053,
3897135-3897327,3897442-3897524,3897850-3897881
Length = 660
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 380 VLGVVFSMSRQMVLLDRQVSVILQN*GLPLQGDHHTQYHQFVW 508
V G +F M ++ L + + I++ +P DH + +QF W
Sbjct: 130 VAGELFGMLITVLFLQQAIKGIIEEFKVPRDADHSSPIYQFQW 172
>02_05_0463 -
29248675-29249391,29250024-29250142,29250276-29250495,
29250621-29250739,29251013-29251093,29251751-29251802,
29252392-29252514
Length = 476
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 75 EITMLFDEWSCLALLFTRRFSVLL-NFLHIKGPCIFRSVVYTLF 203
++TM+F E C+A LFT + + N+ KG + V T F
Sbjct: 188 KVTMVFPESHCMARLFTPKIAEYYENYYTSKGVTFVKGTVLTSF 231
>03_03_0257 + 15903723-15905201
Length = 492
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 274 GNVGFLISGFFASSAFFVTSCIFLNISKKLPSFFIGIGSCFFDVEADGIA*STGVSNSA 450
GNV + + FF ++ SC F N+S + + G+C F +E D V++SA
Sbjct: 415 GNVSYAFNQFFQAANQMKGSCNFNNLS-MITTSDPSQGTCRFQIEIDTGRHDLAVASSA 472
>01_06_1224 - 35508842-35510404
Length = 520
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -1
Query: 530 PPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTS 399
PPP V S DD+E+G P +ELL D+ PS+ST+
Sbjct: 61 PPPAPVVSELPDDLEFGLHPPPPLVRASELLGWEDR--PSSSTA 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,998,267
Number of Sequences: 37544
Number of extensions: 315303
Number of successful extensions: 876
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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