Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_D22
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine...    33   0.25 
AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholin...    33   0.25 
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    30   1.3  
AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine r...    29   4.1  
AL132852-3|CAN86966.1|  249|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    28   7.1  
AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family...    27   9.4  
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ...    27   9.4  
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ...    27   9.4  
AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine
           receptor (62.5 kD)(acr-23) protein.
          Length = 545

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 527 PPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTSKKQLPIPIKN 369
           P GAV+  QI D +  D   +E P  AE  T    A P  ++  + L IP  N
Sbjct: 419 PDGAVKFNQISDFKNNDIGNMESPRMAESQTSETFAAPMDTSFTESLHIPELN 471


>AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholine
           receptor protein 23 protein.
          Length = 545

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 527 PPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTSKKQLPIPIKN 369
           P GAV+  QI D +  D   +E P  AE  T    A P  ++  + L IP  N
Sbjct: 419 PDGAVKFNQISDFKNNDIGNMESPRMAESQTSETFAAPMDTSFTESLHIPELN 471


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 78   ITMLFDEWSCLALLFTRRFSVLLNFLHIKGPCIFRSVVYTLF 203
            +T+L   +  L ++FT   ++L +FLHI  P +F   ++T F
Sbjct: 937  VTILMSTFFFLPIIFTHSQTILTSFLHI--PVLFLGTLFTSF 976


>AF016449-13|AAG24003.1|  350|Caenorhabditis elegans Serpentine
           receptor, class t protein8 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 223 FTSPVFSTRPPRLFPMNGNVGFLISGFFASSAFFVTSCIFLNISKKLPSFFIGIGSCFFD 402
           +  P F T+  R  P+ G   FLISG      +F+     L ++ K+P + + +    FD
Sbjct: 21  YACPDFMTKSSRKQPLLGAY-FLISGIVFLVLYFLCFLAVLKLNLKIPVYQLMLVLSIFD 79

Query: 403 V 405
           +
Sbjct: 80  I 80


>AL132852-3|CAN86966.1|  249|Caenorhabditis elegans Hypothetical
           protein Y95D11A.3 protein.
          Length = 249

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -1

Query: 545 PKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTSKKQLP 384
           P ++ P    +   + D I   DP +++     + +  +DQ++PS S+    LP
Sbjct: 60  PNDVDPNDVYLFDEETDQIHQLDPNQLKNNEEIDDVEYIDQSVPSTSSMMTSLP 113


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = -1

Query: 581 SRQEXRDXDKS-PPKEIKPPPGAVESTQIDDIE-YGDPPEVEGPNFAELLTPVDQAIPSA 408
           S +  +  D+S PP + + P  +  ST       Y + P+    +  +  T   +AIPS 
Sbjct: 576 SMEPSQSVDQSAPPSQAQIPATSTPSTSSQQQNAYPEFPDFPSSSGYQEPTVAPEAIPSP 635

Query: 407 STSKKQLPIPIKNDGSFLEMFKKMQEV 327
           S S   +P   +ND   L+     QE+
Sbjct: 636 SVSDPIMPQSSQNDQE-LQAISDQQEI 661


>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 587 HRSRQEXRDXDKSPPKEIKPPP 522
           H   +E R  D++PP+E  PPP
Sbjct: 134 HSGPREDRFSDRNPPREHSPPP 155


>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical protein
            T06D8.1b protein.
          Length = 3653

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 224  KKAKAIDEQCVDNTPKDAWSL-YMQEVKKYRETSCEEERKTRPL 96
            +K   +D  C D TP  +W+   + +V      +C +E+KT  +
Sbjct: 3471 QKTAHLDTNCTDVTPTTSWTFTKINQVVAIDCVTCADEKKTHDI 3514


>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical protein
            T06D8.1a protein.
          Length = 3719

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 224  KKAKAIDEQCVDNTPKDAWSL-YMQEVKKYRETSCEEERKTRPL 96
            +K   +D  C D TP  +W+   + +V      +C +E+KT  +
Sbjct: 3471 QKTAHLDTNCTDVTPTTSWTFTKINQVVAIDCVTCADEKKTHDI 3514


>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
            protein T06D8.1b protein.
          Length = 3653

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 224  KKAKAIDEQCVDNTPKDAWSL-YMQEVKKYRETSCEEERKTRPL 96
            +K   +D  C D TP  +W+   + +V      +C +E+KT  +
Sbjct: 3471 QKTAHLDTNCTDVTPTTSWTFTKINQVVAIDCVTCADEKKTHDI 3514


>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical protein
            T06D8.1a protein.
          Length = 3719

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 224  KKAKAIDEQCVDNTPKDAWSL-YMQEVKKYRETSCEEERKTRPL 96
            +K   +D  C D TP  +W+   + +V      +C +E+KT  +
Sbjct: 3471 QKTAHLDTNCTDVTPTTSWTFTKINQVVAIDCVTCADEKKTHDI 3514


>U52002-3|AAL02476.1| 1306|Caenorhabditis elegans Cadherin family
           protein 5, isoformb protein.
          Length = 1306

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -1

Query: 482 GDPPEVEGPNFAEL--LTPVDQAIPSASTSKKQLPIPIKNDGSFLEMFKKMQEV 327
           G P E E P F     L+P  Q +PS  T+K   P P+      L   K++  V
Sbjct: 505 GAPVEPEFPQFPTFPTLSPHPQELPSLPTTKMAPPQPVPTQSPPLPTPKRLAPV 558


>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
            protein T06D8.1b protein.
          Length = 3653

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 224  KKAKAIDEQCVDNTPKDAWSL-YMQEVKKYRETSCEEERKTRPL 96
            +K   +D  C D TP  +W+   + +V      +C +E+KT  +
Sbjct: 3471 QKTAHLDTNCTDVTPTTSWTFTKINQVVAIDCVTCADEKKTHDI 3514


>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
            protein T06D8.1a protein.
          Length = 3719

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 224  KKAKAIDEQCVDNTPKDAWSL-YMQEVKKYRETSCEEERKTRPL 96
            +K   +D  C D TP  +W+   + +V      +C +E+KT  +
Sbjct: 3471 QKTAHLDTNCTDVTPTTSWTFTKINQVVAIDCVTCADEKKTHDI 3514


>AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical
           protein Y39H10A.2 protein.
          Length = 740

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +1

Query: 151 SCI*RDHASLGVLSTHCSSIALAFFTSPV---FSTRPPRLFPMNGNVGFLISGFFASSAF 321
           +CI R  ++  V+  HCS I     T+P+     T+      +  N  F +  FF  SAF
Sbjct: 303 NCI-RVISTFWVIFGHCSEITFMVITNPIDLYDFTKDTYTGTLISNAYFSVDTFFFISAF 361

Query: 322 FVTSCIFLNISKK 360
            ++   F  + K+
Sbjct: 362 LLSFLWFKQLEKQ 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,679,840
Number of Sequences: 27780
Number of extensions: 278892
Number of successful extensions: 977
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)