Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_D21
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.0  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   9.0  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = -1

Query: 456 GSCTFLNYRLATEFNKSIILL*VISVRFPFIACLSKICFCTWYIDYR 316
           G+C     ++A   N    +  V  + FP    L  IC+   Y+ Y+
Sbjct: 449 GNCRKRGEKIARHINSVSYIDKVARIVFPASFGLLNICYWVIYVTYQ 495


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 214 ICNTVEDAGDSCQTT 170
           +C   E  GD CQ T
Sbjct: 111 VCRNEEYTGDDCQKT 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,874
Number of Sequences: 438
Number of extensions: 2546
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)