Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_D20
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   3.0  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   4.0  
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    25   6.9  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   9.1  

>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -1

Query: 278 FHLWLCDDFRGRKLNHARLQLMCHSRSHRAALTPRCCHLFYSDICRQTCYGYSC 117
           F L   D F   K  H  + + CH R HR++      +  Y D C    Y Y C
Sbjct: 196 FSLLYSDGFDFIKFLHVCVCVKCHGREHRSSGK----NFVYCDHC-SNVYHYDC 244


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 65  ILGTIHNIIAFIVLNSDDSYTRNKF 139
           +LGT+  +I+F  ++S   YTR +F
Sbjct: 704 VLGTLDCLISFARISSQSGYTRPEF 728


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -2

Query: 208 TADLIGPHSHQGAAIYSIVTFADKLVTGIAVVAIQNYKCDDVVDCPQYY-RGVLTYACG 35
           T  LI      GA I+SI       + G AV +   YK D  +  P++Y R    Y CG
Sbjct: 214 TPQLIPNLRISGARIHSITIDLPIKLNGNAVFSEITYK-DGTIAAPEFYAREDELYVCG 271


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 192 PMRSAVTHKLETSVIELPAPKIIT*P*MKSIRCLVH 299
           P+ S +T  L+    ELPAP++IT P ++  + + H
Sbjct: 678 PLPSIITEFLD----ELPAPQVITGPRIQPTKLIDH 709


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,330
Number of Sequences: 5004
Number of extensions: 43979
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)