Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_D20
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365... 48 6e-06
07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387... 42 4e-04
06_03_0822 + 25006380-25006544,25006616-25006747,25006886-250069... 31 0.57
10_01_0262 + 2752044-2752079,2752880-2753167,2753198-2753551 28 5.3
01_06_0447 + 29452194-29452361,29453232-29453317,29453403-294536... 28 5.3
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114... 27 7.0
01_06_0991 + 33634334-33634454,33634656-33634939,33636250-336367... 27 7.0
06_03_0346 + 19778379-19778837 27 9.2
06_02_0194 + 12885340-12885708,12886098-12886367,12886476-128865... 27 9.2
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 27 9.2
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96... 27 9.2
>03_01_0475 +
3656628-3656791,3656944-3657013,3657114-3657310,
3657409-3657484,3657794-3657877,3658247-3658326,
3658422-3658548,3658727-3658786,3658874-3658924,
3659013-3659171,3659296-3659428,3659545-3659717
Length = 457
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/102 (23%), Positives = 57/102 (55%)
Frame = -2
Query: 325 IVTCILVVLCTKQRIDFIYGYVMILGAGSSITLVSSLCVTADLIGPHSHQGAAIYSIVTF 146
++ V + Q + +Y M++GA +++ +V+++ + + L+G + A +Y ++F
Sbjct: 324 VIAGAAVFVLPSQMHNLMYPLAMVIGAANALVMVTTIGLESALVGDDLNGCAFVYGSLSF 383
Query: 145 ADKLVTGIAVVAIQNYKCDDVVDCPQYYRGVLTYACGGSAAL 20
DK+ GIA+ +++Y +D + C + RG+ T + G+ +
Sbjct: 384 LDKMSCGIALFVLESY--EDSISCGE-TRGLYTVSRFGTGLI 422
>07_03_1019 +
23337543-23337697,23338315-23338384,23338555-23338740,
23339006-23339080,23339161-23339240,23339357-23339483,
23340608-23340667,23341926-23341976,23342048-23342206,
23342528-23342660,23343097-23343166,23343516-23343570
Length = 406
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/81 (23%), Positives = 46/81 (56%)
Frame = -2
Query: 325 IVTCILVVLCTKQRIDFIYGYVMILGAGSSITLVSSLCVTADLIGPHSHQGAAIYSIVTF 146
I++ + +V+ +F+Y + +G +++ V+S+ + L+G + A +Y ++F
Sbjct: 289 ILSGVGIVVLPSGMHNFMYALSITIGVANALMTVTSISMEGILVGEDLNGCAFVYGSLSF 348
Query: 145 ADKLVTGIAVVAIQNYKCDDV 83
DK+ G+A+ +++Y+ D V
Sbjct: 349 VDKVSCGLALYILESYQDDTV 369
>06_03_0822 +
25006380-25006544,25006616-25006747,25006886-25006922,
25007050-25007093,25007878-25007988
Length = 162
Score = 31.1 bits (67), Expect = 0.57
Identities = 12/64 (18%), Positives = 35/64 (54%)
Frame = -2
Query: 325 IVTCILVVLCTKQRIDFIYGYVMILGAGSSITLVSSLCVTADLIGPHSHQGAAIYSIVTF 146
++ V + Q + IY +++GA +++ +++++ + + L+G + +Y ++F
Sbjct: 23 VIAGAAVFVLPSQMHNLIYPLAVVIGAANTLVMLTTIGLESALVGDDLNGCTFVYGSLSF 82
Query: 145 ADKL 134
DK+
Sbjct: 83 LDKI 86
>10_01_0262 + 2752044-2752079,2752880-2753167,2753198-2753551
Length = 225
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 247 AGSSITLVSSLCVTADLIGPHSHQGAA 167
AGS T SS A+L GP HQG++
Sbjct: 16 AGSRTTATSSWVAAAELEGPGRHQGSS 42
>01_06_0447 +
29452194-29452361,29453232-29453317,29453403-29453610,
29454252-29454381,29454561-29454745,29454858-29454989,
29455747-29455851
Length = 337
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = -2
Query: 199 LIGPHSHQGAAIYSIVTFADKLVTGIAVVAIQNYKCDDVVDCPQYYRGVLTYACGGSAAL 20
++G + GA++ IV +A + +A + Y+C + +CP G L GSA+
Sbjct: 80 ILGFYKGNGASVLRIVPYA-----ALHYMAYERYRCWILNNCPSLGTGPLVDLLAGSASG 134
Query: 19 G 17
G
Sbjct: 135 G 135
>07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,
1141770-1142063,1142145-1142337,1142624-1142694,
1142781-1144200
Length = 1254
Score = 27.5 bits (58), Expect = 7.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 209 HSRSHRAALTPRCCH 165
HS +HRA P CCH
Sbjct: 1074 HSETHRARPNPACCH 1088
>01_06_0991 +
33634334-33634454,33634656-33634939,33636250-33636795,
33643361-33643966
Length = 518
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -1
Query: 257 DFRGRKLNHARLQLMCHSRSHRAALTP 177
D R L H LQL SRS A LTP
Sbjct: 89 DAAARPLEHVALQLADRSRSRSAPLTP 115
>06_03_0346 + 19778379-19778837
Length = 152
Score = 27.1 bits (57), Expect = 9.2
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = -2
Query: 247 AGSSITLVSSLCVTADLIGPHSHQGAAIYSIVTFADKLVTGIAVVAIQNYKCD 89
+GSS T S+ V D P +G AI+S LVTG+A+VA+ + C+
Sbjct: 5 SGSSTT-TSTPPVAPDESRPPVVKGPAIFSYTCAG--LVTGVALVAVVVFYCN 54
>06_02_0194 +
12885340-12885708,12886098-12886367,12886476-12886592,
12888044-12888094,12889599-12889719,12890146-12890311,
12890598-12890691
Length = 395
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -3
Query: 522 NNFDAEIIL*XTVTGVFYNYIYKKHCTFNIMNYNSIKWI 406
NN D ++L V G FY ++ + + NS+ W+
Sbjct: 83 NNGDEPVLLTGVVPGSFYGRLFAAESLHLVCSSNSLHWL 121
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 8 RQYAKCGTSAACVREHPSIILGT 76
RQY CG +AC ++ P + GT
Sbjct: 646 RQYTPCGCQSACGKQCPCLTNGT 668
>02_01_0135 +
967172-967229,968316-968657,968936-969015,969063-969698,
969819-971527,971563-972514,972821-973273,974303-974497
Length = 1474
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -1
Query: 272 LWLC--DDFRGRKLNHARLQLMCHSR 201
+W+C D+F + L H L+L+C R
Sbjct: 295 MWVCVSDNFNEKNLTHEMLELVCKDR 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,705,784
Number of Sequences: 37544
Number of extensions: 269014
Number of successful extensions: 567
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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