Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_D20
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55376-5|AAA98007.1|  501|Caenorhabditis elegans Hypothetical pr...    50   1e-06
AF039052-7|AAO91672.2|  462|Caenorhabditis elegans Hypothetical ...    30   0.88 
AF039052-6|AAF98635.2|  534|Caenorhabditis elegans Hypothetical ...    30   0.88 
Z98860-1|CAB11544.1|  677|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z70208-1|CAA94141.1|  339|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF099922-1|AAK21410.2|  509|Caenorhabditis elegans Hypothetical ...    27   8.2  

>U55376-5|AAA98007.1|  501|Caenorhabditis elegans Hypothetical
           protein F16H11.1 protein.
          Length = 501

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
 Frame = -2

Query: 274 IYGYVMILGAGSSITLVSSLCVTADLIGPHSHQGAAIYSIVTFADKLVTGIAVVAIQNY- 98
           IY   + +G   +I L++SL +TADLI  ++  GA +Y  ++F DKL  GIA   I+ + 
Sbjct: 372 IYALAVGIGIAQAILLITSLSITADLINKNTESGAFVYGAMSFFDKLSNGIAYQLIELWT 431

Query: 97  KCDDVVDCPQ----YYRGVLTYACGGSAALGILSL 5
              D +   +    +YR V+ +  G    L  L L
Sbjct: 432 PAYDALKPHEVSAIFYRRVMVFVPGTCLVLAFLVL 466


>AF039052-7|AAO91672.2|  462|Caenorhabditis elegans Hypothetical
           protein T22D1.3b protein.
          Length = 462

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 220 SLCVTADLIGPHSHQGAAIYSIVTFADKLVTGIAVVA 110
           S+C+T D++     QG A+Y +  +A++   GI +VA
Sbjct: 347 SICITQDVMAVGRAQGTAVYDVARYANQ--RGIPIVA 381


>AF039052-6|AAF98635.2|  534|Caenorhabditis elegans Hypothetical
           protein T22D1.3a protein.
          Length = 534

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 220 SLCVTADLIGPHSHQGAAIYSIVTFADKLVTGIAVVA 110
           S+C+T D++     QG A+Y +  +A++   GI +VA
Sbjct: 347 SICITQDVMAVGRAQGTAVYDVARYANQ--RGIPIVA 381


>Z98860-1|CAB11544.1|  677|Caenorhabditis elegans Hypothetical
           protein Y26G10.1 protein.
          Length = 677

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 423 NSIKWIVIMFFLYSVTINSSY*LHDIQLKKTTQLLHAF*WFCAL 292
           +S+  + ++  L SV ++  Y  +  +  KTTQ      WFCA+
Sbjct: 52  SSLSVLYLLVQLLSVLVHFLYIFYTQKANKTTQFSELVTWFCAI 95


>Z70208-1|CAA94141.1|  339|Caenorhabditis elegans Hypothetical
           protein F54B11.1 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 274 IYGYVMILGAGSSITLVSSLCVTADLIGPHSHQG 173
           I+ +V     GSS+   + LCVT  LI  H+  G
Sbjct: 11  IFKFVAYSVVGSSVIATAFLCVTLPLIYEHAQNG 44


>AF099922-1|AAK21410.2|  509|Caenorhabditis elegans Hypothetical
           protein F56F11.5 protein.
          Length = 509

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 483 TGVFYNYIYKKHCTFNIMNYNSIKWIVIMFFLYSVTINSSY 361
           +G FY+  Y+K   +N + Y S  +++ +FF+      +SY
Sbjct: 256 SGPFYDN-YEKRDEYNFLQYFSFSYVLTVFFVQQNPKKNSY 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,395,106
Number of Sequences: 27780
Number of extensions: 258857
Number of successful extensions: 548
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)