Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_D17
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106575-2|AAQ62448.1|  506|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U21317-1|AAA62524.2|  627|Caenorhabditis elegans Na/h exchanger ...    28   6.8  
AF497824-1|AAM18102.1|  644|Caenorhabditis elegans putative Na-H...    28   6.8  
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.     27   9.1  
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin ...    27   9.1  
AF016429-1|AAB65365.2|  518|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AF106575-2|AAQ62448.1|  506|Caenorhabditis elegans Hypothetical
           protein K04F1.14b protein.
          Length = 506

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 422 NSENVSVLEQSQTYHCIKNHLFCSHHPL 339
           N  ++SVL + QTY+C +  L  +H+P+
Sbjct: 89  NITSLSVLPKLQTYYCDEEGLIIAHNPM 116


>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 498 KNYEELQQIENTNPHHQNIVRRIYSQLGKCISIGTIANIP 379
           K Y +  Q+ENT+      +  + S LG+ I +G I   P
Sbjct: 96  KAYRDAIQVENTDRQAFRGIESLLSSLGQAIGLGNIWRFP 135


>U21317-1|AAA62524.2|  627|Caenorhabditis elegans Na/h exchanger
           protein 2 protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 498 KNYEELQQIENTNPHHQNIVRRIYSQL 418
           K   E  Q+E  N H +N++  IYS+L
Sbjct: 434 KPIAEFLQVEKKNVHSKNMIEHIYSEL 460


>AF497824-1|AAM18102.1|  644|Caenorhabditis elegans putative Na-H
           exchanger isoform 2 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 498 KNYEELQQIENTNPHHQNIVRRIYSQL 418
           K   E  Q+E  N H +N++  IYS+L
Sbjct: 451 KPIAEFLQVEKKNVHSKNMIEHIYSEL 477


>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
          Length = 1404

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 24/74 (32%), Positives = 37/74 (50%)
 Frame = -3

Query: 561  GSFYFAFSRFVVTL*VNLTLNKNYEELQQIENTNPHHQNIVRRIYSQLGKCISIGTIANI 382
            GS Y + S+  V     L LNKN E+   I +T    +  VRR  S+    +++G    I
Sbjct: 1314 GSSYTSSSKRPVNAVGPLPLNKNVEDQSPIFHTVMRKKTKVRRSNSEHDTIMNVG----I 1369

Query: 381  PLHQESPILQSSSS 340
            P+    PI++S S+
Sbjct: 1370 PM-TSVPIIRSPSA 1382


>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical protein
            F35H10.10 protein.
          Length = 1404

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 24/74 (32%), Positives = 37/74 (50%)
 Frame = -3

Query: 561  GSFYFAFSRFVVTL*VNLTLNKNYEELQQIENTNPHHQNIVRRIYSQLGKCISIGTIANI 382
            GS Y + S+  V     L LNKN E+   I +T    +  VRR  S+    +++G    I
Sbjct: 1314 GSSYTSSSKRPVNAVGPLPLNKNVEDQSPIFHTVMRKKTKVRRSNSEHDTIMNVG----I 1369

Query: 381  PLHQESPILQSSSS 340
            P+    PI++S S+
Sbjct: 1370 PM-TSVPIIRSPSA 1382


>U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin
           protein 6 protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 368 NHLFCSHHPLTKSPQHLTCYFTTFT 294
           N+ FCS+H  T     +  YF TFT
Sbjct: 320 NNQFCSYHLSTLGSYRVALYFLTFT 344


>AF016429-1|AAB65365.2|  518|Caenorhabditis elegans Hypothetical
           protein T21H3.4 protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 516 VNLTLNKNYEELQQIENTNPHHQNIVRRIYSQL 418
           + L LN+N+ +++     + HH + +RR   +L
Sbjct: 69  IGLALNENFADIRMFSADHSHHPDCIRRFSLEL 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,373,119
Number of Sequences: 27780
Number of extensions: 285686
Number of successful extensions: 716
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)