Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_D16
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    25   4.0  
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    25   4.0  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   7.0  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    24   9.3  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    24   9.3  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    24   9.3  

>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -2

Query: 401 KNHFQFNKVRSNNSTKVL*HPRFVPILTLVSIPPDL 294
           +  F  +KVR++NSTK      F+ +++++S  P+L
Sbjct: 257 RRSFSKSKVRNSNSTK---RRNFISLISMISPRPNL 289


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 224 VRKRNAVVGSYNIVVFSTVRTASLIFANTDTKPRL 120
           +R++N   G +NI+   +VR    +F++  T P+L
Sbjct: 182 LREQNVQYGFFNILADDSVRQGLKVFSDWPTFPQL 216


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -2

Query: 176 STVRTASLIFANTDTKPRLGWIVCSCPEAFPVSPTCLVFY 57
           ST+ T + +F N  +   + +++ S    F V+P   ++Y
Sbjct: 15  STIATVTELFPNEYSNADIAYVLLSTVVVFTVTPGIALYY 54


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +1

Query: 82  TGKASGQLQTIHPKRGFVSVFANIKDAVLTVEKTTILYDPT 204
           +G  SG ++ + PK    +V++       T   +T++  PT
Sbjct: 146 SGTVSGTVEIVSPKNNPTTVYSGTVATTETFSSSTVVVIPT 186


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -2

Query: 410 LLNKNHFQFNKVRSNNSTKVL*HPRFVPILTLVSIPPDL 294
           LL K+       R  +  K+L HP  + +  +++ P D+
Sbjct: 69  LLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDI 107


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +1

Query: 82  TGKASGQLQTIHPKRGFVSVFANIKDAVLTVEKTTILYDPT 204
           +G  SG ++ + PK    +V++       T   +T++  PT
Sbjct: 146 SGTVSGTVEIVSPKNNPTTVYSGTVATTETFSSSTVVVIPT 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,601,264
Number of Sequences: 5004
Number of extensions: 29392
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)