Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_D16
         (447 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0382 + 17470508-17470807,17471449-17474517                       28   3.9  
01_06_0894 - 32781957-32782287,32783019-32783284,32783771-327840...    28   3.9  
10_08_1020 - 22309900-22310361,22310455-22310697,22311164-22311223     27   5.2  
11_04_0369 - 16885918-16886080,16886235-16886671,16886767-168870...    27   6.9  
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29...    27   6.9  
03_06_0105 + 31675083-31675313,31676171-31676815                       27   6.9  

>07_03_0382 + 17470508-17470807,17471449-17474517
          Length = 1122

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 96  WAAADYPSQTRFCVSVCKYQGCSPHG*K 179
           +A+ D PS  +FC+  C    C P G K
Sbjct: 848 FASGDMPSLVKFCLESCPKLKCLPEGLK 875


>01_06_0894 -
           32781957-32782287,32783019-32783284,32783771-32784040,
           32785007-32785134,32785284-32785893
          Length = 534

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 318 SSLYSPRSTVLLVMLHHYLGIIHC 247
           SS +SP++ V L  L H+ G+++C
Sbjct: 296 SSFFSPQNPVKLSSLKHHSGVLYC 319


>10_08_1020 - 22309900-22310361,22310455-22310697,22311164-22311223
          Length = 254

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 126 RFCVSVCKYQGCSPH 170
           RFC   CK  GCSPH
Sbjct: 167 RFCSLGCKVVGCSPH 181


>11_04_0369 -
           16885918-16886080,16886235-16886671,16886767-16887028,
           16887050-16887353,16887771-16888166,16888531-16888579,
           16889303-16889737
          Length = 681

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 132 KTSFGMDSLQLPRGLSGFTNL 70
           K  F  D+LQ   GLSGFT+L
Sbjct: 640 KIKFSSDNLQYCHGLSGFTSL 660


>05_01_0042 -
           290077-290676,291093-291233,291675-291764,292364-292563,
           292685-292743,292827-292942
          Length = 401

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 139 VFANIKDAVLTVEKTTILYDPTTAFLFLTYY 231
           V+ N+KD     E   +  +PTT  LFL  Y
Sbjct: 61  VYKNLKDGKAVPEPEAVKPEPTTEILFLCSY 91


>03_06_0105 + 31675083-31675313,31676171-31676815
          Length = 291

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 327 YSNSSLYSPRSTVLLVMLHHYLGIIHCHMYT 235
           YS +  Y  R  + L  + +Y G++H H YT
Sbjct: 194 YSEAKYYHMRMDMSLSPITYYDGMVHVHPYT 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,631,345
Number of Sequences: 37544
Number of extensions: 167549
Number of successful extensions: 379
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)