Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_D15
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    28   1.1  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    27   1.9  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    25   7.5  
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    25   9.9  

>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 381 HAGVSKPCTNISEPSGFQLLNLAFKEL 461
           HAG SKP   +    GFQ +N AF +L
Sbjct: 759 HAGRSKPADFVRVLEGFQRINSAFDQL 785


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +3

Query: 327 NCIAKRSGVLNKAESITTHAGVSKPCTNISEPSGFQLLNLAFKELFSYVRIVHLN-PLSS 503
           +C+   SG+L   E   ++  V  P TN SE S  ++ +   +   S   I   +  LSS
Sbjct: 130 DCVVPSSGLLMPKEEFISNEEVGIPATNSSEKSNVKIADEIAEVTHSNSSIGKSSADLSS 189

Query: 504 LIDLKNDSRNLVAASCSEVED 566
             D  +DS +  + S ++VE+
Sbjct: 190 --DSSSDSESNTSFSETDVEE 208


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 135 QDVNAIKRSDFFCIRRMLCCL 197
           Q++N  K+   FCI  +LC L
Sbjct: 171 QNINPSKKDAIFCIANLLCLL 191


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 442 FSSWKPDGSEILVHGLETPACVVMDSALLRTPDLLA 335
           F++WK +G E+      TP  VV + A L   DL+A
Sbjct: 129 FNAWKTEGLELETGEPRTPKPVVYEGAKL-NKDLVA 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,032
Number of Sequences: 5004
Number of extensions: 43722
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)