Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_D15
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   8.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.1  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 319 GFQIVLLKDQVSLIKLSPSQHMLVFPSR 402
           GF  ++ +DQ++L+K   S+ M++  +R
Sbjct: 398 GFDELMREDQIALLKACSSEVMMLRMAR 425


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 481 TILTYEKSSLKAKFSSWKPDGSEI-LVHGLET 389
           T   ++      KF SW  DG+++ LV   ET
Sbjct: 116 TWFPFDDQHCDMKFGSWTYDGNQVDLVLSSET 147


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 481 TILTYEKSSLKAKFSSWKPDGSEI-LVHGLET 389
           T   ++      KF SW  DG+++ LV   ET
Sbjct: 116 TWFPFDDQHCDMKFGSWTYDGNQVDLVLSSET 147


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 483 HLNPLSSLIDLKN-DSRNLV 539
           HLN L S IDL N ++R++V
Sbjct: 146 HLNVLKSFIDLFNANARSVV 165


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 481 TILTYEKSSLKAKFSSWKPDGSEI-LVHGLET 389
           T   ++      KF SW  DG+++ LV   ET
Sbjct: 184 TWFPFDDQHCDMKFGSWTYDGNQVDLVLSSET 215


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 481 TILTYEKSSLKAKFSSWKPDGSEI-LVHGLET 389
           T   ++      KF SW  DG+++ LV   ET
Sbjct: 184 TWFPFDDQHCDMKFGSWTYDGNQVDLVLSSET 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,820
Number of Sequences: 438
Number of extensions: 2804
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)