Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_D12
         (656 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606681-1|CAE54810.1|  399|Drosophila melanogaster bocksbeutel ...    29   5.6  
AE014297-984|AAX52941.1|  399|Drosophila melanogaster CG9424-PB,...    29   5.6  

>AJ606681-1|CAE54810.1|  399|Drosophila melanogaster bocksbeutel
           alpha protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 392 RHRIQIPLQYQFR*KKLTD*LYRKYHLSLYIRYISKTVLEVLLYVLIT 535
           RH  Q+    QFR   L   L +KY+L  Y+  +   +L  ++YV++T
Sbjct: 351 RHHDQVSPMAQFR--ALAVSLDQKYNLKFYLILVVSVMLATMVYVVLT 396


>AE014297-984|AAX52941.1|  399|Drosophila melanogaster CG9424-PB,
           isoform B protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 392 RHRIQIPLQYQFR*KKLTD*LYRKYHLSLYIRYISKTVLEVLLYVLIT 535
           RH  Q+    QFR   L   L +KY+L  Y+  +   +L  ++YV++T
Sbjct: 351 RHHDQVSPMAQFR--ALAVSLDQKYNLKFYLILVVSVMLATMVYVVLT 396


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,811,366
Number of Sequences: 53049
Number of extensions: 395119
Number of successful extensions: 941
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2806815600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)