Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_D08
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar... 33 0.052
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 29 0.49
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.0
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch... 27 3.4
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|... 27 3.4
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 4.5
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 6.0
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 26 6.0
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 25 7.9
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 25 7.9
>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 390
Score = 32.7 bits (71), Expect = 0.052
Identities = 21/92 (22%), Positives = 39/92 (42%)
Frame = +3
Query: 384 LVIFARPNVSEIIKISRPTVCSIVPCNHTSMGVGLFMRSLIKYFLGHIDILIGLYCRANG 563
+V R + + + T+ S V CN G + S KY GH D++ G+ +
Sbjct: 161 IVKITRSKAKDALLVMDNTMLSPVLCNPLDFGYDIVYESATKYLSGHHDLMGGVIATKSD 220
Query: 564 R*AAY*VSFNCFIKLRKIGSRWAYFINFIFLQ 659
++ + F + +G+ A F F+ L+
Sbjct: 221 E-----IAKSVFFNINAMGAAMAPFECFLLLR 247
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 29.5 bits (63), Expect = 0.49
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Frame = +3
Query: 384 LVIFARPNVSEIIKISRPTVCSIVPCNHTSM--GVGLFMRSLIKYFL--GHIDILIGLYC 551
L + P++ E +K R TVC +V C S+ + + + + I ++ H +++ L+
Sbjct: 368 LTLIRFPSLYEQLKKPRYTVCFVVSCIFVSIFDTLTVLLLTWINPYVINSHTGLILALFY 427
Query: 552 RANGR*AAY*VSFNCFIKLRKIGSRWAYFINFIFL---QLLYFIVLLTSRIYS 701
N A+ SF K+ S I +F+ Q+L+++V + S I S
Sbjct: 428 LTNLIALAF--SFRAAATHSKLSSEDLSSIEIVFIWYAQILWYLVFIVSVILS 478
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 597 FIKLRKIGSRWAYFINFIFLQLLYFIVLLT 686
+I K+G RW ++IN I+ L + IV T
Sbjct: 255 YITESKLGWRWDFWINMIWAGLTWVIVCFT 284
>SPAC14C4.08 |mug5||meiotically upregulated gene
Mug5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -2
Query: 616 IFLNLIKQLKLTQYAAYLPFALQYKPINMSICPRKYFIKDLINK 485
++ +K++ T + YL L++ +++C R Y I+ L+NK
Sbjct: 127 LYQRQLKKISTTIESYYLADTLRHNQNILNLCERIYNIQKLLNK 170
>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 510 YFLGHIDILIGLYCRANGR*AAY*VSFNCFIKLRKIG 620
YFLG + +IG C A+G +S C IK R++G
Sbjct: 326 YFLGILYFVIGGLCAASG----VILSIACLIKPRRVG 358
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Frame = +3
Query: 582 VSFNCFIKLRKIGSRWAYFINFI-------FLQLLYFIVLLTSRIYS 701
+S+ CF L +I W YFI + F+ LL+ ++R+YS
Sbjct: 146 LSYICFSSLIRICHCWTYFIRIMGLSSLNKFVNLLHDFETTSNRVYS 192
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 305 DSCPNYTAVCSFFYGIFINNPVSRFTFGDFCSSKRI 412
+S YT +C+ I + F F FC KRI
Sbjct: 1545 ESIKTYTLLCAHDSQKRIGGSIQEFEFISFCQQKRI 1580
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 66 WRSNTTVFYQIVLFFLLRSIINHQWSYC 149
+R+ VFY V LL +I NH W+ C
Sbjct: 393 YRATKDVFYLHVGELLLSNIENHLWTPC 420
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = -2
Query: 505 IKDLINKPTPIDVWLQGTIEQTVGRDILIISDTFGRAKITKCETADGVIDKNSIKKGTYC 326
+ D ++ TP++ W TIE+ V R + I T AD I K + K+
Sbjct: 191 VLDSLHLDTPLEKWDDDTIEKVVNRFVDIKFPTVIALNKIDHPDADANISKIARKEDPNR 250
Query: 325 CIIGTAV 305
++ +A+
Sbjct: 251 LVLASAI 257
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 283 VQAYKFIDLSSQPEMKSSWEIEVNEANLFLEGKLIPN 173
V+ K + +S+ E+KS I N + LFL G+ I N
Sbjct: 455 VRLRKCLKVSNTTELKSMKLINNNPSRLFLHGERIHN 491
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,397
Number of Sequences: 5004
Number of extensions: 60085
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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