Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_D07
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100...    29   3.8  
06_01_0335 + 2412766-2415655,2416108-2416208,2416871-2416895,241...    29   3.8  
02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461...    28   8.7  

>06_03_1076 +
           27409107-27409204,27409731-27409835,27409915-27410032,
           27410180-27410230,27410328-27410419,27410558-27410657,
           27411018-27411137,27411227-27411295,27411468-27411514,
           27411597-27411652,27412293-27412333,27412570-27412675,
           27413891-27414023,27414096-27414645
          Length = 561

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 39  LKYIYSKFNKKYQCRRDTNKXKYCLITSLVKHIAFSKCNSQNISRERSNKRS 194
           L Y + +F  K  C R   K   CLI     H+ FS+  S+   + R +KR+
Sbjct: 280 LCYAFIEFETKEACERAFFKMDNCLIDDRRIHVDFSQSVSKLWGQFRQSKRN 331


>06_01_0335 +
           2412766-2415655,2416108-2416208,2416871-2416895,
           2416977-2417049,2417191-2417373,2418164-2418227,
           2418427-2418447,2418862-2418905,2420575-2420650,
           2421359-2421373
          Length = 1163

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 66  KKYQCRRDTNKXKYCLITSLVKHIAFSKCNSQNISRERSNKRS 194
           +K+ CR D  +   CL+   + H+AF   NS  I+ + +  RS
Sbjct: 475 EKFVCRIDDKET--CLMEENIHHVAFYNSNSSEIAMDLNQVRS 515


>02_05_1224 + 35045268-35045270,35045735-35045863,35046037-35046180,
            35046306-35046451,35046583-35046739,35046838-35046896,
            35046978-35047137,35047716-35047865,35047969-35048105,
            35048186-35048332,35048428-35048540,35048880-35048971,
            35049637-35049738,35050108-35050145,35050255-35050381,
            35050462-35050632,35050721-35050852,35050929-35051038,
            35051118-35051178,35051386-35051427,35051756-35051933,
            35052043-35052248,35052843-35052962,35053138-35053182,
            35053310-35053408,35053846-35054058,35054254-35054393,
            35054469-35054583,35054684-35054722,35054816-35054899,
            35054969-35055139,35055891-35056100,35056193-35056378,
            35056473-35056601,35056679-35056749,35056834-35056933,
            35057016-35057072,35057778-35057834,35057940-35058020,
            35058256-35058338,35058448-35058562
          Length = 1572

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -1

Query: 660  SKSVSLKVLGLCHYXVVLTXKNITMLHSYLPKLLLTSLFIHTECSLIS 517
            S  + LK L   H   VL  K  T + SY+   L  SL +  EC   S
Sbjct: 1373 SLDILLKKLQDNHVPPVLAQKVFTQIFSYINVQLFNSLLLRRECCSFS 1420


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,026,890
Number of Sequences: 37544
Number of extensions: 261966
Number of successful extensions: 650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)