Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_D01
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    28   1.0  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    25   5.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.2  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    25   7.2  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        25   7.2  

>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 435 CMIFEIKLKISNILQTCFYLTVVGLVEERHRPAE 536
           C+ +E+  KIS I+    +LT + LV E  +  E
Sbjct: 550 CIFYELDYKISTIVLLQNFLTQIALVNEEQKEGE 583


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 203 LPADITRQQRKAVFGAST*VLNC 135
           L  D+TR   + +FGA   +LNC
Sbjct: 453 LKGDVTRHGTRTIFGAFKDLLNC 475


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 365  KTFKMYLSIIYYIICMNLMSKMFLYDI 445
            KT++    II+ +IC    S +F YDI
Sbjct: 1571 KTYEESKLIIWKLICQKACSLLFKYDI 1597


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 70  ILCSLLHQPDFQEI 29
           +LCS++H PD Q+I
Sbjct: 69  MLCSIIHDPDCQDI 82


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 319 TSTILLVLYTPTYTNQILIAS 257
           T T+L+V   P YTN++L  S
Sbjct: 42  TVTVLIVPVLPVYTNKVLCCS 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,346
Number of Sequences: 5004
Number of extensions: 43705
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)