Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C24
         (675 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6DA12 Cluster: Putative uncharacterized protein; n=1; ...    36   0.90 
UniRef50_Q4FM27 Cluster: TrkH-like cation transport protein; n=2...    33   6.3  

>UniRef50_A6DA12 Cluster: Putative uncharacterized protein; n=1;
           Caminibacter mediatlanticus TB-2|Rep: Putative
           uncharacterized protein - Caminibacter mediatlanticus
           TB-2
          Length = 129

 Score = 35.9 bits (79), Expect = 0.90
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = +3

Query: 462 EYIKYSLSLLIFFYSVVLAKSVIIEV*LVFENRIIIVYKLTISNNYSR 605
           E I  S+  LIFF+S + +K   I   L+ +N I+I YKL  S   S+
Sbjct: 2   EQIFKSIVFLIFFFSFICSKEYYISYQLISKNGILIYYKLNFSKCLSK 49


>UniRef50_Q4FM27 Cluster: TrkH-like cation transport protein; n=2;
           Candidatus Pelagibacter ubique|Rep: TrkH-like cation
           transport protein - Pelagibacter ubique
          Length = 469

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = -3

Query: 478 LYLIYSQFDHRRQEQKFDNK*IVCIFVSL*CLLQFFRPFFIFLSYSNNFQRLFLN 314
           ++LIY+    +     F N+ I  +F  L  L+ FF    +FL++ NNF  LFL+
Sbjct: 246 IFLIYNLIFTKNHNLNFFNEDIHLLFYFLFLLIIFF----VFLNFENNFSELFLS 296


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 555,521,607
Number of Sequences: 1657284
Number of extensions: 9424743
Number of successful extensions: 17196
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17190
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)