Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C24
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.3  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.3  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    26   5.7  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.6  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   10.0 
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   10.0 

>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -3

Query: 259 FSHTETVLIPLPSISTIFTTFAGNTELCVKRHLLVIE 149
           F+  +T + P+P++ ++F T   +  + +K  L +IE
Sbjct: 168 FTTEDTSINPIPTLPSVFCTIVDDEGISLKELLYIIE 204


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -3

Query: 535 SIITDFAKTTL*KNINKDKLYLIYSQFDHR 446
           +I+T+F+K+   +N+NKD L L++   + R
Sbjct: 798 AILTEFSKSIRFRNVNKD-LLLVFGNMEDR 826


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 382 LQFFRPFFIFLSYSN 338
           L  FRPF IFL+Y N
Sbjct: 443 LMIFRPFLIFLAYVN 457


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
 Frame = -3

Query: 586 IVSLYTIMILFSKTNYTSII----TDFAKTTL*KNINKDKLYLIYS-QFDHRRQEQKFDN 422
           +++ ++ + LFS  +++  +     D   T+L  +IN  KL L +S     +R    F +
Sbjct: 46  LINTHSNLCLFSNFSHSCFLFCTHPDTLPTSL--SINPKKLSLSFSFPLSQKRPFPNFLH 103

Query: 421 K*IVCIFVSL*CLLQFFRPFFIFLSYSNNFQRLF 320
                      CLL FF     FLS+S +F  LF
Sbjct: 104 PFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLF 137


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = -3

Query: 355 FLSYSNNFQRLFLN*PFWYCSATLI*QISKDTFSHTETVLIPLPSISTIFTTFAGNTELC 176
           F +Y  + ++L +   +  CS T   QI+  T S  ++V  PLP    +F  + G++ + 
Sbjct: 687 FSAYFESSRQLDIKNIYKICSLTQDGQIATATGSSLQSVGYPLP--QEVFLVYIGDSGIS 744

Query: 175 V 173
           V
Sbjct: 745 V 745


>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 225 PPYRLYLQHLLATLNYVSNVTYLSLN*LD 139
           PPY++  +     +N VSNV+  S+N +D
Sbjct: 132 PPYKVKKESCHTEINNVSNVSTESINVID 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,240
Number of Sequences: 5004
Number of extensions: 44211
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)