Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C24
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0404 - 21833736-21834035,21834506-21834662,21834834-218350...    29   4.5  
05_02_0004 - 5528713-5528718,5529039-5529390,5529802-5530339,553...    28   5.9  

>01_05_0404 -
           21833736-21834035,21834506-21834662,21834834-21835080,
           21835424-21835637,21836565-21836728,21836843-21836950,
           21841596-21841797,21843676-21844194
          Length = 636

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 118 LLMAXVQTAILCMQCGEKMMP*EWKIVLIEXNVDGLDV 5
           +L+  VQ A+LC+Q   +  P   KIV +  N + LDV
Sbjct: 566 VLIRYVQMALLCVQANPEHRPNIDKIVAMLSNTEALDV 603


>05_02_0004 -
           5528713-5528718,5529039-5529390,5529802-5530339,
           5530354-5531731,5531895-5532015,5534226-5534545
          Length = 904

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 304 WYCSATLI*QISKDTFSHTETVLIPLPSIS 215
           W C+AT +  +   T + T  +L PLP +S
Sbjct: 12  WMCTATTVTTMEAATMATTNPLLYPLPDLS 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,175,483
Number of Sequences: 37544
Number of extensions: 230785
Number of successful extensions: 356
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)