Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C19
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    31   0.13 
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    27   2.1  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.5  
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz...    25   8.6  

>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +2

Query: 197 PSV*TGMVRLPTTQTPGHNADYCPTST*HLVH*RTSAIALTGILSAFESTSANGFGEHGI 376
           P+V  G  RL  T TP HN +       H V   T+  A+  + S F     +G+ + GI
Sbjct: 491 PTVSVGTERLRITPTPAHNTE-------HYVQSLTN--AMNDVWSKFNINRIDGWEKRGI 541

Query: 377 D-ERLYAFLVIPNRYRH 424
           D  RL  F V+P    H
Sbjct: 542 DVGRLCKFPVLPFTTTH 558


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 543 HMFGQFVYRLQIWILLMKSLQSLDGELSGTVVL 445
           H+F  +V  L IWI L+ S   + G L+G  VL
Sbjct: 178 HLFALWVINLYIWIKLIDSKDFVLGFLAGLSVL 210


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 637 VVEKIQHPNFELSSYHNDIAIL 572
           V  K+QHP+FE S++   + ++
Sbjct: 61  VFSKLQHPSFERSAFFTSVGLI 82


>SPAC4D7.05 |sum1|tif34|translation initiation factor
           eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 271 VHLTSGTLTDLRYRPDRHPF 330
           VH +  T+TDL++ PDR  F
Sbjct: 187 VHNSGSTITDLQFYPDRTYF 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,209
Number of Sequences: 5004
Number of extensions: 59242
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)