Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C19
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...   100   1e-23
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.0  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score =  100 bits (240), Expect = 1e-23
 Identities = 62/198 (31%), Positives = 101/198 (51%), Gaps = 8/198 (4%)
 Frame = -3

Query: 739 AAHCTRRWDAXELYVRLGEYDXQRXXDSRXYNFKVVEK-IQHPNFELSSYH----NDIAI 575
           AAHC    +  +L + +GE+D     ++       + K I HP +++        NDIA+
Sbjct: 201 AAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIAL 260

Query: 574 LKLHRPAVFNTYVWPICLPPAD-LD-LTNEIATVIGWGTQWYGGPHSNVLMEVSVPVWDH 401
           LK  +   F   V P CLP    LD       TV+GWG   + G  S++L + ++ +   
Sbjct: 261 LKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSFNGMLSHILQKTTLNMLTQ 320

Query: 400 QKCVEAFVDSVFTETVCAGGLEGGKDACQGDSGGPLMYQ-MSSGRWAVVGVVSWGLRCGE 224
            +C + +  ++    +CA     GKDACQ DSGGP+++Q   + R   +G++SWG  CG+
Sbjct: 321 VECYK-YYGNIMVNAMCA--YAKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECGK 377

Query: 223 PNHPGLYARVDKYLDWIL 170
             +P    +V  Y+DWI+
Sbjct: 378 --YPNGNTKVGSYIDWIV 393


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 377 DERLYAFLVIPNRYR 421
           +ER   F+ IPNRYR
Sbjct: 771 EERGILFMPIPNRYR 785


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -3

Query: 316 QGDSGGPLMYQMSSGRWAVVGV 251
           Q ++GG +   +++G W ++GV
Sbjct: 181 QDEAGGDISSFITNGEWDLLGV 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,808
Number of Sequences: 438
Number of extensions: 4104
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)