Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C18
         (563 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    25   0.34 
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    25   0.34 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   4.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   4.2  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   9.6  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 518 SLSSRIATPIDIDSPCRSPFEDIPSPESRLSNMQAPLSEFPDSPSGV 378
           +LS +I T +    P RSP+E I     +      P ++F D+P  +
Sbjct: 105 NLSPQIQTQVARPPPARSPYEWIKKTSYQSQPNPEP-ADFADAPDAI 150


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 518 SLSSRIATPIDIDSPCRSPFEDIPSPESRLSNMQAPLSEFPDSPSGV 378
           +LS +I T +    P RSP+E I     +      P ++F D+P  +
Sbjct: 105 NLSPQIQTQVARPPPARSPYEWIKKTSYQSQPNPEP-ADFADAPDAI 150


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 11/50 (22%), Positives = 20/50 (40%)
 Frame = -1

Query: 230 NPASQRYDVRFTDDALVRLHDLIGDRADAFKSNIESLLSEDPRSNYVRGR 81
           +P S  YD   T   ++    +  D  + F   +     +DP S  + G+
Sbjct: 268 DPNSHLYDYDLTTHVMLLSDWMHEDATERFPGRLAVNTGQDPESLLINGK 317


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 11/50 (22%), Positives = 20/50 (40%)
 Frame = -1

Query: 230 NPASQRYDVRFTDDALVRLHDLIGDRADAFKSNIESLLSEDPRSNYVRGR 81
           +P S  YD   T   ++    +  D  + F   +     +DP S  + G+
Sbjct: 268 DPNSHLYDYDLTTHVMLLSDWMHEDATERFPGRLAVNTGQDPESLLINGK 317


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -1

Query: 233 NNPASQRYDVRFTDDALVRLHDLIGDRADAFKSNIESLLSEDPRSNYVRG 84
           +NP ++ YD   +   +  L     D  D F S+I +     P +  V G
Sbjct: 201 DNPHAKLYDYDLSSHVITILDWTKEDGTDKFMSHIHNDGDNKPDTILVNG 250


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,137
Number of Sequences: 336
Number of extensions: 2908
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)