Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C18
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce...    27   1.4  
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo...    26   3.3  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    25   5.8  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    25   7.7  
SPBC21.04 |med8|sep15|mediator complex subunit Med8|Schizosaccha...    25   7.7  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   7.7  
SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.7  

>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 473

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 54  HTTVFVIRIPASDVIRPWIFRQKTFNVTFEGIRSIPN*V-VKTDQCIISESNVVSL*SRV 230
           H   F     +SD I+ W F +  F   FEG  +I N + + +D  + S ++  S+    
Sbjct: 340 HPDEFTFASGSSDNIKHWKFPEGAFMGNFEGHNAIVNTLSINSDNVMFSGADNGSM-CFW 398

Query: 231 VYPSGHSY 254
            + SGH Y
Sbjct: 399 DWKSGHKY 406


>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 311 GQERFTPPQSANQSIRHDGIRVAAW 237
           G + + PP+     I HDG R  AW
Sbjct: 283 GSQEYAPPE-VYMGIAHDGFRADAW 306


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 320 DPDGQERFTPPQSANQSIRHDGIRVAAWINNPASQRYDVR 201
           DP+ +ER   P S   S+    I+ AA+ +    ++YD++
Sbjct: 303 DPEDEERLEKPYSVWTSMMQRSIQTAAYFD---EEQYDIK 339


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -1

Query: 515 LSSRIATPIDIDSPCRSPFEDIPSPESRLSNMQAPLSEFPDSPSGVDLVDGNPRSP 348
           +S +  + ID +SP +S    +PS   RLS   A  +    S  G D     P +P
Sbjct: 156 VSGKYPSVID-NSPVKSKLGALPSARPRLSYSAAQTAPISLSSEGSDYFSRPPPTP 210


>SPBC21.04 |med8|sep15|mediator complex subunit
           Med8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 42  QVF*HTTVFVIRIPASDVIRPWIFRQKTFNVTFEGIRSIPN 164
           Q+    T F+  +  S+ + PW    K FN+    I S+ N
Sbjct: 22  QIVQSLTHFLAILHQSESLSPWPTIHKNFNILLSQIHSLSN 62


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 296 TPPQSANQSIRHDG 255
           TPP S   SIRHDG
Sbjct: 162 TPPTSGRFSIRHDG 175


>SPCC613.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 245 AAWINNPASQRYDV-RFTDDALVRLHDL 165
           A W++      + + ++TD++  RLHDL
Sbjct: 20  AGWMDTHMKDEHHIDKYTDESFFRLHDL 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,157
Number of Sequences: 5004
Number of extensions: 48446
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)