Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_C18
(563 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 31 0.63
02_05_0326 + 27977888-27977890,27978494-27978569,27978649-27978971 30 1.5
02_01_0422 - 3084940-3087072 30 1.5
01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896... 29 1.9
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 29 2.6
11_01_0384 - 2908789-2908991,2909104-2909464,2909574-2909731,290... 29 3.4
06_03_0109 - 16742572-16742605,16742771-16742953,16743557-16743708 29 3.4
02_05_0006 - 24897409-24897922,24898041-24898303 29 3.4
12_02_0046 + 12830974-12832386 28 4.5
09_04_0010 - 13686424-13686822 28 4.5
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 28 4.5
04_04_1376 + 33058306-33059763,33059851-33059991,33060594-330606... 28 4.5
01_06_1212 + 35459675-35460073 28 4.5
05_07_0054 + 27368832-27369287 28 5.9
05_05_0239 - 23543592-23544293,23544482-23544634,23544737-235449... 28 5.9
02_01_0415 + 3037720-3039849 28 5.9
02_01_0655 + 4867737-4868642 27 7.8
02_01_0397 - 2877242-2878479,2878557-2878861,2879862-2880549,288... 27 7.8
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 31.1 bits (67), Expect = 0.63
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -1
Query: 446 SPESRLSNMQAPLSEFPDSPSGVDLVDGNPRSPLRRPDAERGDPDGQERFTPPQSANQSI 267
SPE RL + + S +P + GNP S +R P RGD ER S+++S+
Sbjct: 114 SPERRLDRLASRRSSRAVTPRRGTVDGGNPLSDMRCP--RRGDDSSMERGGGSSSSSRSL 171
Query: 266 RHD 258
+
Sbjct: 172 SRE 174
>02_05_0326 + 27977888-27977890,27978494-27978569,27978649-27978971
Length = 133
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 92 VRGRYPDHEYSCVLEDLSISCVFDRNXHVC 3
V G YP+H ++ +++D +++ D N H C
Sbjct: 101 VIGSYPNHAFTHIVDDHALAFFHDDNVHAC 130
>02_01_0422 - 3084940-3087072
Length = 710
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -1
Query: 182 VRLHDLIGDRADAFKSNIESLLSEDPRSNYVRGRYPDHEYSC 57
+R + L G+ A SN+ +L + D SN+ G+ P+ YSC
Sbjct: 320 LRGNKLTGELAKVNYSNLPNLKTLDFASNHFTGKIPESIYSC 361
>01_01_1130 +
8959909-8960396,8960588-8960638,8960736-8960827,
8960964-8961054,8961877-8961937,8962172-8962216,
8962318-8962391,8962565-8962637,8963288-8963345,
8963398-8963468,8963801-8963837,8964040-8964128,
8964207-8964263,8964366-8964449,8964529-8964627,
8964765-8964869,8965145-8965216,8965308-8965497,
8965810-8966207
Length = 744
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = -1
Query: 449 PSPESRLSNMQAPLSEFPDSPSGVDLVDGN---PRSPLRRPDAERGDP 315
P P S S +A SE +SP + DG P PL RP + R P
Sbjct: 97 PPPSSAPSGGRATSSEARESPHATSVDDGGRAPPPPPLPRPTSARATP 144
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Frame = -1
Query: 458 EDIPSPESRLSNMQAPLSEFPDSPSGVDLVDGNPRSPLRRPDAERGDP---DGQERFTPP 288
E PSP +R + + D P D +G P P RR A DP D +E TP
Sbjct: 209 ESPPSPPTRGRRRKRAATS--DPPPEDDEEEGTPAQPRRRKRAATSDPPPEDDEEEGTPA 266
Query: 287 QSANQSIRHDGIR 249
+ R G R
Sbjct: 267 PPRRRRRRKAGDR 279
>11_01_0384 -
2908789-2908991,2909104-2909464,2909574-2909731,
2909877-2910097,2910909-2911139,2911545-2911582,
2911700-2911804
Length = 438
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 398 PDSPSGVDLVDGNPRSPLRRPDAERGDPDGQ 306
P P+ D+ D P P PD DP G+
Sbjct: 2 PPKPAAEDVADEQPEPPDEDPDVAEADPTGR 32
>06_03_0109 - 16742572-16742605,16742771-16742953,16743557-16743708
Length = 122
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = -1
Query: 509 SRIATPIDIDSPCRSPFEDIPSPESRLSNMQAP--LSEFPDSPSG--VDLVDGNPRSPLR 342
++I++P+D + P +SP +P+P+ R + P ++PS + +G+P P+
Sbjct: 26 AKISSPLDTNPPKKSPSTILPAPKIRGVESRPPGGFVNLINAPSNHMHHVAEGSPSQPI- 84
Query: 341 RPDAERGD 318
+ E GD
Sbjct: 85 --NVENGD 90
>02_05_0006 - 24897409-24897922,24898041-24898303
Length = 258
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -1
Query: 239 WIN--NPASQRYD-VRFTDDALVRLHDLIGDRADAFKSNI 129
WIN P +R + R +DA++ LHDL+G+R A + +
Sbjct: 57 WINYLRPDIKRGNFTREEEDAIIHLHDLLGNRWSAIAARL 96
>12_02_0046 + 12830974-12832386
Length = 470
Score = 28.3 bits (60), Expect = 4.5
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Frame = -1
Query: 497 TPIDIDSPCRSPFEDIPSPESRLSN--MQAPLSEF----------PDSPSGVDLVDGNPR 354
TP +P PFE PSP+ + + + P+ + P +P GVD +D R
Sbjct: 342 TPPSPHAPRHDPFEPPPSPDPPIQSYAIDPPIQSYAMDPFEQPPSPYAPHGVDDMDEFTR 401
Query: 353 SPLRRPDAERGDPDGQERFTPPQSAN 276
S + + GD PP + N
Sbjct: 402 SLEAQLEEADGDEIAAATVAPPMAQN 427
>09_04_0010 - 13686424-13686822
Length = 132
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 457 KIYLHQSQDSATCKPHYQNFRTPHLVSTSLMGIQGRLYVGR 335
+IY +S P Q R+PHL L+G + LYV R
Sbjct: 56 RIYKPRSSGRCLLHPPPQGRRSPHLHHPELLGTRSGLYVVR 96
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 200 FTDDALVRLHDLIGDRADAFKSNIESLLSEDPRS-NYVRGRYPD 72
F ++LV L+ IGD D K+ + +LSED S N + Y D
Sbjct: 932 FLSNSLVDLYSAIGDSVDTVKA-LNDILSEDVISWNSILSMYAD 974
>04_04_1376 +
33058306-33059763,33059851-33059991,33060594-33060644,
33061094-33061171,33061245-33061388,33061871-33062002
Length = 667
Score = 28.3 bits (60), Expect = 4.5
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = -1
Query: 455 DIPSPESRLSNMQAPLSEFPDSPSGVDLVDGNPRSPLRRPDAERGDPDG-QERFTPPQSA 279
D P P + L+ + PL +F P G+D G+ RR +R + +G + + S
Sbjct: 179 DQPEPFNSLNGSENPLGDFSLMPEGIDQRPGSSLDG-RRLACKRKNIEGVNGQCSAGAST 237
Query: 278 NQSIRHDGI--RVAAWINNPA 222
+ S R+D I +A+ +NP+
Sbjct: 238 SFSHRNDSIFHNIASSSHNPS 258
>01_06_1212 + 35459675-35460073
Length = 132
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 457 KIYLHQSQDSATCKPHYQNFRTPHLVSTSLMGIQGRLYVGR 335
+IY +S P Q R+PHL L+G + LYV R
Sbjct: 56 RIYKPRSSGRCLLHPPPQGRRSPHLHHPELLGTRSGLYVVR 96
>05_07_0054 + 27368832-27369287
Length = 151
Score = 27.9 bits (59), Expect = 5.9
Identities = 24/84 (28%), Positives = 32/84 (38%)
Frame = -1
Query: 512 SSRIATPIDIDSPCRSPFEDIPSPESRLSNMQAPLSEFPDSPSGVDLVDGNPRSPLRRPD 333
S+ + + PC P + +P + MQ P S S S L G +P RRP
Sbjct: 13 SASVLLQAAMQRPC--PSSQVQAPALLQAAMQPPSSSSQASASA--LFQG---APARRPP 65
Query: 332 AERGDPDGQERFTPPQSANQSIRH 261
R DG R PP + H
Sbjct: 66 PPRFGADGPLRPAPPPRRRLGLPH 89
>05_05_0239 -
23543592-23544293,23544482-23544634,23544737-23544922,
23544951-23545097,23545274-23545411,23545527-23545727
Length = 508
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 346 KGDLGFPSTRSTPDGESGNSDSGA 417
K D+G P T +TP S N D GA
Sbjct: 461 KQDIGSPETATTPARRSSNDDLGA 484
>02_01_0415 + 3037720-3039849
Length = 709
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 167 LIGDRADAFKSNIESLLSEDPRSNYVRGRYPDHEYSC 57
L G+ + SN+ +L + SNY G PD YSC
Sbjct: 325 LAGELSKVNFSNLHNLQALGLSSNYFTGTIPDSIYSC 361
>02_01_0655 + 4867737-4868642
Length = 301
Score = 27.5 bits (58), Expect = 7.8
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 524 LYSLSSRIATPIDIDSPCRSPFEDIPSPESRLSNMQAPLSEFPDS-PSGVDLV 369
L SLS ++ P RS F+++PSP S +P + P + P DLV
Sbjct: 194 LTSLSLSLSLPGFHHDSARSHFQELPSPSRSPSPPPSPPAASPSAYPFNADLV 246
>02_01_0397 -
2877242-2878479,2878557-2878861,2879862-2880549,
2881998-2882016
Length = 749
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -1
Query: 458 EDIPSPESRLSNMQAPLSEF--PDSPSGVDLVDGNPRSPLRRP 336
E P+PE +N Q+P D+PS + +V +P + + RP
Sbjct: 94 EKEPTPEPNTANHQSPAKRQRKSDNPSRLPIVASSPTTEIPRP 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,081,937
Number of Sequences: 37544
Number of extensions: 327247
Number of successful extensions: 1051
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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