Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_C18
(563 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23521-2|AAC46815.2| 316|Caenorhabditis elegans Hypothetical pr... 29 2.3
U23521-1|ABD63220.1| 348|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z99281-37|CAJ44244.1| 740|Caenorhabditis elegans Hypothetical p... 29 3.1
Z99281-34|CAJ44243.1| 917|Caenorhabditis elegans Hypothetical p... 29 3.1
AY611485-1|AAT37524.1| 740|Caenorhabditis elegans epidermal gro... 29 3.1
AY611484-1|AAT37523.1| 917|Caenorhabditis elegans epidermal gro... 29 3.1
AF099919-3|AAC68801.2| 862|Caenorhabditis elegans Hypothetical ... 29 3.1
Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical pr... 28 5.3
U23526-4|AAB36849.1| 204|Caenorhabditis elegans Hypothetical pr... 28 5.3
U23526-3|AAT92089.1| 225|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical pr... 27 7.0
AF068719-7|AAO21425.1| 399|Caenorhabditis elegans Uncoordinated... 27 7.0
AF068719-6|AAV58864.1| 457|Caenorhabditis elegans Uncoordinated... 27 7.0
AF068719-5|AAC17781.1| 458|Caenorhabditis elegans Uncoordinated... 27 7.0
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 27 7.0
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein. 27 9.3
AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical ... 27 9.3
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno... 27 9.3
>U23521-2|AAC46815.2| 316|Caenorhabditis elegans Hypothetical
protein F41C3.8a protein.
Length = 316
Score = 29.1 bits (62), Expect = 2.3
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 3/130 (2%)
Frame = -1
Query: 491 IDIDSPCRSPFEDIPSPESRLSNMQAPLSEFPDSPSGVDLVDGNPRSPLRRPDAERGDPD 312
+D+ S +P + +P S+M P P G + + +PLR + R +
Sbjct: 20 VDMSSSGSTPVSKVETPILPSSSMSQHPPNNP-FPRGSQSYNSSGSTPLRVNTSNRSSAN 78
Query: 311 GQERFTPPQSANQSIRHDG-IRVAAWINNPASQ--RYDVRFTDDALVRLHDLIGDRADAF 141
Q PPQ + +G ++ + ++ SQ + R D L ++ GD + F
Sbjct: 79 SQRPLLPPQDRPVRFQTNGHLQPSVYMPTTHSQADSSESRRKHDKLSDVYSQSGDTVE-F 137
Query: 140 KSNIESLLSE 111
N+ ++E
Sbjct: 138 AKNLSDYINE 147
>U23521-1|ABD63220.1| 348|Caenorhabditis elegans Hypothetical
protein F41C3.8b protein.
Length = 348
Score = 29.1 bits (62), Expect = 2.3
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 3/130 (2%)
Frame = -1
Query: 491 IDIDSPCRSPFEDIPSPESRLSNMQAPLSEFPDSPSGVDLVDGNPRSPLRRPDAERGDPD 312
+D+ S +P + +P S+M P P G + + +PLR + R +
Sbjct: 52 VDMSSSGSTPVSKVETPILPSSSMSQHPPNNP-FPRGSQSYNSSGSTPLRVNTSNRSSAN 110
Query: 311 GQERFTPPQSANQSIRHDG-IRVAAWINNPASQ--RYDVRFTDDALVRLHDLIGDRADAF 141
Q PPQ + +G ++ + ++ SQ + R D L ++ GD + F
Sbjct: 111 SQRPLLPPQDRPVRFQTNGHLQPSVYMPTTHSQADSSESRRKHDKLSDVYSQSGDTVE-F 169
Query: 140 KSNIESLLSE 111
N+ ++E
Sbjct: 170 AKNLSDYINE 179
>Z99281-37|CAJ44244.1| 740|Caenorhabditis elegans Hypothetical
protein Y57G11C.24h protein.
Length = 740
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -1
Query: 476 PCRSPFEDIPSPESRLSNMQAPLSEFPDSP--SGVDLVDGNPRS-PLRRPDAERGD-PDG 309
P P++ PSP N P + SP S +PR P+ +P A R D G
Sbjct: 10 PSGDPYQSRPSPGGYYYNRSTPGGQPAPSPSHSQQSASSHHPRGVPMSQPIARRSDYRTG 69
Query: 308 QERFTP 291
E+ TP
Sbjct: 70 SEQMTP 75
>Z99281-34|CAJ44243.1| 917|Caenorhabditis elegans Hypothetical
protein Y57G11C.24g protein.
Length = 917
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -1
Query: 476 PCRSPFEDIPSPESRLSNMQAPLSEFPDSP--SGVDLVDGNPRS-PLRRPDAERGD-PDG 309
P P++ PSP N P + SP S +PR P+ +P A R D G
Sbjct: 10 PSGDPYQSRPSPGGYYYNRSTPGGQPAPSPSHSQQSASSHHPRGVPMSQPIARRSDYRTG 69
Query: 308 QERFTP 291
E+ TP
Sbjct: 70 SEQMTP 75
>AY611485-1|AAT37524.1| 740|Caenorhabditis elegans epidermal growth
factor receptorpathway substrate 8 splice variant B
protein.
Length = 740
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -1
Query: 476 PCRSPFEDIPSPESRLSNMQAPLSEFPDSP--SGVDLVDGNPRS-PLRRPDAERGD-PDG 309
P P++ PSP N P + SP S +PR P+ +P A R D G
Sbjct: 10 PSGDPYQSRPSPGGYYYNRSTPGGQPAPSPSHSQQSASSHHPRGVPMSQPIARRSDYRTG 69
Query: 308 QERFTP 291
E+ TP
Sbjct: 70 SEQMTP 75
>AY611484-1|AAT37523.1| 917|Caenorhabditis elegans epidermal growth
factor receptorpathway substrate 8 splice variant A
protein.
Length = 917
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -1
Query: 476 PCRSPFEDIPSPESRLSNMQAPLSEFPDSP--SGVDLVDGNPRS-PLRRPDAERGD-PDG 309
P P++ PSP N P + SP S +PR P+ +P A R D G
Sbjct: 10 PSGDPYQSRPSPGGYYYNRSTPGGQPAPSPSHSQQSASSHHPRGVPMSQPIARRSDYRTG 69
Query: 308 QERFTP 291
E+ TP
Sbjct: 70 SEQMTP 75
>AF099919-3|AAC68801.2| 862|Caenorhabditis elegans Hypothetical
protein F40G9.9 protein.
Length = 862
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 499 RHQSISILLVEVHLKIYLHQSQDSATCKPHYQNFRTPHLVSTS 371
R +SI E+HL I S+D TC PH +N L +TS
Sbjct: 108 RLRSIHRPTSEIHLNI---NSKDFTTCLPHIENINYAFLKNTS 147
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 499 RHQSISILLVEVHLKIYLHQSQDSATCKPHYQNFRTPHLVSTS 371
R +SI E+HL I S+D TC PH +N L +TS
Sbjct: 648 RLRSIHRPASEIHLNI---DSKDFTTCLPHIENINYAFLHNTS 687
>Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical
protein C17G1.4b protein.
Length = 844
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 428 SNMQAPLS-EFPDSPSGVDLVDGNPRSPLRRPDAERGDPDGQERFTPPQS 282
S Q P+ + G+ ++G P RPD ++ P Q+R PP S
Sbjct: 783 SQQQPPMGGPMANHMGGMQPMNGTPTEGYYRPDGQQYWPQQQQRSWPPAS 832
>U23526-4|AAB36849.1| 204|Caenorhabditis elegans Hypothetical
protein C01C10.2a protein.
Length = 204
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 254 IRVAAWINNPASQRYDVRFT-DDALVRLHDLIGDRADAFKSNIESL 120
I + ++ N Q +V F+ DDA +++H + +R F+ E L
Sbjct: 45 ISIRGYVINYVQQNDEVLFSCDDAFIKIHQKLAERNSQFEDAFEYL 90
>U23526-3|AAT92089.1| 225|Caenorhabditis elegans Hypothetical
protein C01C10.2b protein.
Length = 225
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 254 IRVAAWINNPASQRYDVRFT-DDALVRLHDLIGDRADAFKSNIESL 120
I + ++ N Q +V F+ DDA +++H + +R F+ E L
Sbjct: 45 ISIRGYVINYVQQNDEVLFSCDDAFIKIHQKLAERNSQFEDAFEYL 90
>Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical
protein E03G2.4 protein.
Length = 333
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = -1
Query: 476 PCRSPFEDIPSPESRLSNMQAPLSEFPDSPSGVDLVDGNPRSPLRR----PDAERGDPDG 309
P +S +P + + N P + G D + G P P ++ PD G P G
Sbjct: 261 PGQSGLPGMPGLQGKPGNDGYPGRDGSPGDQGDDGIPGGPGKPGQKGYPGPDGSAGFPGG 320
Query: 308 QERFTPPQSA 279
+ PP++A
Sbjct: 321 CDHCPPPRTA 330
>Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical
protein ZK512.5 protein.
Length = 1232
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -2
Query: 460 LKIYLHQSQDSATCKPHYQNFRTPHLVSTSLMGIQGRLYVGRMLNAEIPMVKKGSLHRSR 281
LK +LH + S QNF+ P L++ RLY+ R ++A + G + +S
Sbjct: 413 LKTFLHFDEQSGKVIESVQNFKGP-LIAGQTPTHSVRLYIQRQIDALRQIRNAGDVKKSE 471
Query: 280 QI 275
+
Sbjct: 472 VV 473
>AF068719-7|AAO21425.1| 399|Caenorhabditis elegans Uncoordinated
protein 23, isoform b protein.
Length = 399
Score = 27.5 bits (58), Expect = 7.0
Identities = 21/63 (33%), Positives = 22/63 (34%)
Frame = -1
Query: 476 PCRSPFEDIPSPESRLSNMQAPLSEFPDSPSGVDLVDGNPRSPLRRPDAERGDPDGQERF 297
P RSP D PS S N S FP P + G PD R DG
Sbjct: 12 PSRSPIPDFPSFSSGFPNDSEWSSNFPSFP---NFPSGFSNGSSNFPDFPRFGRDGGLSP 68
Query: 296 TPP 288
PP
Sbjct: 69 NPP 71
>AF068719-6|AAV58864.1| 457|Caenorhabditis elegans Uncoordinated
protein 23, isoform c protein.
Length = 457
Score = 27.5 bits (58), Expect = 7.0
Identities = 21/63 (33%), Positives = 22/63 (34%)
Frame = -1
Query: 476 PCRSPFEDIPSPESRLSNMQAPLSEFPDSPSGVDLVDGNPRSPLRRPDAERGDPDGQERF 297
P RSP D PS S N S FP P + G PD R DG
Sbjct: 70 PSRSPIPDFPSFSSGFPNDSEWSSNFPSFP---NFPSGFSNGSSNFPDFPRFGRDGGLSP 126
Query: 296 TPP 288
PP
Sbjct: 127 NPP 129
>AF068719-5|AAC17781.1| 458|Caenorhabditis elegans Uncoordinated
protein 23, isoform a protein.
Length = 458
Score = 27.5 bits (58), Expect = 7.0
Identities = 21/63 (33%), Positives = 22/63 (34%)
Frame = -1
Query: 476 PCRSPFEDIPSPESRLSNMQAPLSEFPDSPSGVDLVDGNPRSPLRRPDAERGDPDGQERF 297
P RSP D PS S N S FP P + G PD R DG
Sbjct: 71 PSRSPIPDFPSFSSGFPNDSEWSSNFPSFP---NFPSGFSNGSSNFPDFPRFGRDGGLSP 127
Query: 296 TPP 288
PP
Sbjct: 128 NPP 130
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 416 APLSEFPDSPSGVDLVDGNPRSPLRRPDAERGDPDGQE 303
APL+ PD+P G++LVD + R + + D DG +
Sbjct: 2433 APLAA-PDAPPGINLVDEIMQQVQRDVEDDEEDEDGDQ 2469
>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
Length = 1040
Score = 27.1 bits (57), Expect = 9.3
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = -1
Query: 509 SRIATPIDIDSPCRSPFEDIPS--PESRLSNMQ-APLSEFPDSPSGVDLVDGNPRSPLRR 339
SR+ TPID+ ++ PS +R ++ P F +PS DL G +P
Sbjct: 234 SRVGTPIDLGLHQQNNGHVTPSRFANNRYDDLPPTPTPTFRRAPSQGDLPRGFSTAPSTG 293
Query: 338 PDAERGDPDGQERFTPPQSANQSIR 264
P G+E PP+ + S R
Sbjct: 294 PGDFASLRRGREFALPPEQEHHSRR 318
>AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical
protein Y43F4B.4 protein.
Length = 363
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +2
Query: 314 RDLRVQHPAYVKATLDSHQRG--RHQMGSPEILIVGLACC*VLTLVKVYLQMDFYKENRY 487
+DL+ + +++ T+ S R SP L + +A C VL V++Y D +R+
Sbjct: 100 KDLKQKESQWIRRTIISDNRSDVTDICFSPRHLGLMMASCNVLGTVRIYEAPDIVDASRW 159
Query: 488 RLVSQ 502
L+ +
Sbjct: 160 NLIHE 164
>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
abnormal morphology protein19 protein.
Length = 1040
Score = 27.1 bits (57), Expect = 9.3
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = -1
Query: 509 SRIATPIDIDSPCRSPFEDIPS--PESRLSNMQ-APLSEFPDSPSGVDLVDGNPRSPLRR 339
SR+ TPID+ ++ PS +R ++ P F +PS DL G +P
Sbjct: 234 SRVGTPIDLGLHQQNNGHVTPSRFANNRYDDLPPTPTPTFRRAPSQGDLPRGFSTAPSTG 293
Query: 338 PDAERGDPDGQERFTPPQSANQSIR 264
P G+E PP+ + S R
Sbjct: 294 PGDFASLRRGREFALPPEQEHHSRR 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,830,042
Number of Sequences: 27780
Number of extensions: 275246
Number of successful extensions: 838
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -