Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_C17
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2... 156 3e-39
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces... 28 1.5
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 28 1.5
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 27 3.5
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 26 4.6
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 26 4.6
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 26 6.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.1
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 25 8.0
>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 156 bits (379), Expect = 3e-39
Identities = 67/123 (54%), Positives = 92/123 (74%)
Frame = -2
Query: 704 ICSGRKGGEDYIFALLTGYMEPPAGVVXREGQNYNPYFPGGAISMAQVLFDEAAEYSDGT 525
+ GR GG+DYI++LLTGY EPPAGV +G N+NP+FPG I+MA+ LFD+A E+ DGT
Sbjct: 181 VVRGRHGGQDYIYSLLTGYTEPPAGVEVPDGMNFNPFFPGTQIAMARPLFDDAVEFEDGT 240
Query: 524 PATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKL 345
PAT +Q AKDV FL W SEPELD R++M + I + ++L A+ +YKR KW+ +K+RK+
Sbjct: 241 PATTAQAAKDVVNFLHWASEPELDIRKKMGFQVITVLTILTALSMWYKRFKWTPIKNRKI 300
Query: 344 AYK 336
Y+
Sbjct: 301 FYQ 303
>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 257
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -2
Query: 692 RKGGEDY-IFALLTGYMEPPAGVVXREGQNYNPYF 591
R G Y + A L + PP G + R +Y PYF
Sbjct: 197 RNNGPSYSLLASLASQLPPPYGAMIRHTTSYVPYF 231
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 641 PPAGVVXREGQNYNPYFPGGAISMAQVLFDEAAEYSDGTPATAS 510
P + V +NY PY ++S + +L + S TP TAS
Sbjct: 60 PTSNVASNTSENY-PYTGSKSLSSSSILSNSTISTSSSTPITAS 102
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/77 (24%), Positives = 32/77 (41%)
Frame = -2
Query: 551 EAAEYSDGTPATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHK 372
+AA+ SD T +A F+ S P LD+ QMT + +++Y
Sbjct: 202 DAAQDSDKLVYTGDWDPASIADFIGVSSIPLLDELNQMTFGKYQQSGLPLGIIFYNSTES 261
Query: 371 WSTLKSRKLAYKPVSKK 321
L ++P++KK
Sbjct: 262 RDELYD---VFQPLAKK 275
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 449 GRPVRVLSTISRKSQHPWRAVTQSPACRHC 538
GRP R+L+ + +S+ PWR + + C
Sbjct: 16 GRPKRILAPMVDQSELPWRILARRSGADLC 45
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 662 LLTGYMEPPAGVVXREGQNYNPYFPGGAIS 573
LL G E P REGQ Y Y G+I+
Sbjct: 395 LLAGTTESPGEYYVREGQRYKSYRGMGSIA 424
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 635 QEVPCNQSVARRCNLRRPY 691
+E+PC Q V R C+L++ Y
Sbjct: 103 EEMPCEQLVRRVCDLKQGY 121
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 553 SNRTCAIEMAPPGKYGL*FCPSRXTTPAGGSM*PVSSAKM*SSPPLRPEQI 705
SN +I + P G+ P R G P+SS++ S+PP P I
Sbjct: 345 SNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAI 395
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 466 SEHHFKKVATSLASCDAVAGVPSLYSAASS 555
S + ++VAT++ S +A P LYS A S
Sbjct: 22 STRNIRRVATAIGSINANLESPQLYSLAKS 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,787
Number of Sequences: 5004
Number of extensions: 54141
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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