Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_C17
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103... 154 6e-38
01_07_0097 + 41070877-41070942,41071039-41071104,41071189-41071305 88 7e-18
01_06_1151 + 34937738-34937855,34937959-34939244 30 1.6
06_01_0994 + 7719974-7721323 30 2.1
05_04_0020 - 17199627-17199947,17200129-17200203,17200301-172003... 29 3.6
05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625 28 6.3
08_02_0254 - 14879724-14880635 28 8.4
07_03_0902 - 22435692-22436156,22436684-22436923,22437228-224373... 28 8.4
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201... 28 8.4
06_03_1080 + 27436389-27436742,27437573-27437804,27437911-274381... 28 8.4
>05_03_0389 -
13409848-13409964,13410049-13410114,13410209-13410325,
13410822-13410893,13410979-13411258,13411528-13411730,
13412230-13412316,13412705-13412758,13413042-13413221,
13414402-13414576,13414628-13414918,13414923-13415344
Length = 687
Score = 154 bits (374), Expect = 6e-38
Identities = 68/126 (53%), Positives = 90/126 (71%)
Frame = -2
Query: 704 ICSGRKGGEDYIFALLTGYMEPPAGVVXREGQNYNPYFPGGAISMAQVLFDEAAEYSDGT 525
I R G++Y+FALLTGY +PPAGV REG +YNPYFPGGAI+M ++L D A EY DGT
Sbjct: 562 ITKARHNGQNYVFALLTGYRDPPAGVQIREGLHYNPYFPGGAIAMPKMLIDGAVEYEDGT 621
Query: 524 PATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKL 345
PAT +Q+ KDV +FL W +EPE+++R+ M +K I + S+ YY+R +WS LKSRKL
Sbjct: 622 PATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFLLSLALLQAAYYRRMRWSVLKSRKL 681
Query: 344 AYKPVS 327
V+
Sbjct: 682 VLDVVN 687
>01_07_0097 + 41070877-41070942,41071039-41071104,41071189-41071305
Length = 82
Score = 87.8 bits (208), Expect = 7e-18
Identities = 39/82 (47%), Positives = 54/82 (65%)
Frame = -2
Query: 572 MAQVLFDEAAEYSDGTPATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVV 393
M ++L D A EY DGTPAT +Q+ KDV +FL W +EPE+++R+ M +K I + S+
Sbjct: 1 MPKMLIDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFLLSLALLQA 60
Query: 392 YYYKRHKWSTLKSRKLAYKPVS 327
YY+R KWS KSRKL V+
Sbjct: 61 AYYRRMKWSVYKSRKLVLDVVN 82
>01_06_1151 + 34937738-34937855,34937959-34939244
Length = 467
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 448 RSSSSGSEHHFKKV--ATSLASCDAVAGVPSLYSAASSNRTCAIEMAPPGKYGL*FCPSR 621
R+ ++G +HH + V T CD + + L +A S+NR +E G+ P+
Sbjct: 329 RARAAGRKHHCRAVLGGTPFVVCDKCSEILQLPAAVSANRAARLECGGCGETLSIKLPAA 388
Query: 622 XTTPAGGS 645
A GS
Sbjct: 389 AAAAASGS 396
>06_01_0994 + 7719974-7721323
Length = 449
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 424 IALMVICRRSSSSGSEHHFKKVATSLASCDAVAGVPSLYSAASSNRTCA 570
++ V+ R +SSG H + +A + CDA+ G+ + S SS T A
Sbjct: 243 VSAAVVLRELASSGDRHALEAIARAHGMCDALVGL--VTSPVSSQATKA 289
>05_04_0020 -
17199627-17199947,17200129-17200203,17200301-17200384,
17200483-17200562,17201354-17201508,17202602-17203215
Length = 442
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -2
Query: 605 YNPYFPGGAISMAQVLFDEAAEYSDGTPATASQLAKDVATFLKWCSEPELDDRRQ 441
+ P F + +A +F A YS TPA A+ + ++ EP + R+Q
Sbjct: 50 HRPLFALAGMLVAAAIFSLATPYSSSTPAAAAAGSTAANPLARFSVEPAVSRRQQ 104
>05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625
Length = 768
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 336 LVGELSRLERGPLVPLVVVDNGGKHGEHADSFDGH 440
+ E +R + P V VVV+ G GE AD GH
Sbjct: 15 IADEAARRDGSPPVDAVVVEGAGTSGEDADWPSGH 49
>08_02_0254 - 14879724-14880635
Length = 303
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 611 QNYNPYFPGGAISMAQVLFDEAAEYSDGTPATASQLAKDVATFLKWCSEPELDDRRQMTI 432
Q + YFP A E D S++A+ + T WC + +DR M+
Sbjct: 215 QTVSKYFPEWLYDNLNQFCGAATEGIDSRNTCISEVARKLVTIGFWCIQCTPEDRPSMS- 273
Query: 431 KAIGMF 414
+ I MF
Sbjct: 274 EVIDMF 279
>07_03_0902 -
22435692-22436156,22436684-22436923,22437228-22437349,
22437441-22437587,22437753-22437882,22437981-22438116,
22438223-22438428,22438644-22438844,22438999-22439157,
22439781-22439858,22440453-22440542,22440625-22440777,
22440873-22440991,22441190-22441328,22441422-22441525,
22441944-22441989,22442087-22442252,22442356-22442383,
22442460-22442610,22442686-22442829,22442912-22443013,
22443566-22444093
Length = 1217
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 519 DCVTARQGCCDFLEMVLRTRTGRPSADDHQSY 424
D V+ + CC LE+V +R G P+ HQ +
Sbjct: 771 DLVSHQLKCCGVLEVVRISRAGYPTRMTHQQF 802
>07_03_0537 -
19218461-19218982,19219482-19219868,19219993-19220154,
19220464-19221117,19221233-19221277,19223300-19223845,
19223930-19224307,19224642-19225313,19225373-19225456
Length = 1149
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/87 (21%), Positives = 36/87 (41%)
Frame = +2
Query: 443 ADGRPVRVLSTISRKSQHPWRAVTQSPACRHCTQLLRQIELAP*RWHLLGSMDCSSVPHV 622
AD R +R + S H +R ++ + TQ L L W+ M+ + +P
Sbjct: 210 ADFRKIREYAWGSAALAHLYRGLSVAVTPNATTQFLGSATLLMVNWNPYKDMNPAIIPEY 269
Query: 623 XLHQQEVPCNQSVARRCNLRRPYVPSR 703
+ + +++ N++ YVP R
Sbjct: 270 CIAADNICYSRTWLISFNIKEVYVPDR 296
>06_03_1080 +
27436389-27436742,27437573-27437804,27437911-27438159,
27438467-27438517,27438676-27438936,27439019-27439071,
27439201-27439315,27441666-27441920,27442423-27443480
Length = 875
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 394 TTAASMENMPIALMVICRRSSSSGSEHHFKKVATSLASC--DAVAG 525
+ AAS E+ A+ VI SSS GS H T+ +SC DA AG
Sbjct: 738 SAAASGEDE--AMSVIPATSSSGGSNQHAFDAGTTTSSCEIDATAG 781
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,000,075
Number of Sequences: 37544
Number of extensions: 389670
Number of successful extensions: 907
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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