Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_C17
(708 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X06994-1|CAA30052.1| 325|Homo sapiens protein ( Human mRNA for ... 169 8e-42
M16597-1|AAA35730.1| 227|Homo sapiens protein ( Human cytochrom... 169 8e-42
J04444-1|AAA52135.1| 325|Homo sapiens protein ( Human cytochrom... 169 8e-42
DQ300360-1|ABB96244.1| 325|Homo sapiens cytochrome c-1 protein. 169 8e-42
CR541674-1|CAG46475.1| 325|Homo sapiens CYC1 protein. 169 8e-42
BT019798-1|AAV38601.1| 325|Homo sapiens cytochrome c-1 protein. 169 8e-42
BC024650-1|AAH24650.1| 315|Homo sapiens Unknown (protein for IM... 169 8e-42
BC020566-1|AAH20566.1| 325|Homo sapiens cytochrome c-1 protein. 169 8e-42
BC015616-1|AAH15616.1| 325|Homo sapiens cytochrome c-1 protein. 169 8e-42
BC001006-1|AAH01006.1| 325|Homo sapiens cytochrome c-1 protein. 169 8e-42
BC130474-1|AAI30475.1| 723|Homo sapiens tripartite motif-contai... 32 2.3
BC130472-1|AAI30473.1| 723|Homo sapiens tripartite motif-contai... 32 2.3
AK097416-1|BAC05042.1| 708|Homo sapiens protein ( Homo sapiens ... 32 2.3
AF521868-1|AAO14945.1| 723|Homo sapiens tripartite motif protei... 32 2.3
AJ238850-1|CAB52754.1| 1203|Homo sapiens hyperpolarization-activ... 30 9.3
AJ132429-1|CAB42604.1| 1203|Homo sapiens hyperpolarization-activ... 30 9.3
>X06994-1|CAA30052.1| 325|Homo sapiens protein ( Human mRNA for
cytochrome c1. ).
Length = 325
Score = 169 bits (411), Expect = 8e-42
Identities = 75/124 (60%), Positives = 93/124 (75%)
Frame = -2
Query: 704 ICSGRKGGEDYIFALLTGYMEPPAGVVXREGQNYNPYFPGGAISMAQVLFDEAAEYSDGT 525
I R GGEDY+F+LLTGY EPP GV REG +NPYFPG AI+MA ++ + E+ DGT
Sbjct: 200 IVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGT 259
Query: 524 PATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKL 345
PAT SQ+AKDV TFL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKL
Sbjct: 260 PATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKL 319
Query: 344 AYKP 333
AY+P
Sbjct: 320 AYRP 323
>M16597-1|AAA35730.1| 227|Homo sapiens protein ( Human cytochrome
c1 mRNA, partial cds. ).
Length = 227
Score = 169 bits (411), Expect = 8e-42
Identities = 75/124 (60%), Positives = 93/124 (75%)
Frame = -2
Query: 704 ICSGRKGGEDYIFALLTGYMEPPAGVVXREGQNYNPYFPGGAISMAQVLFDEAAEYSDGT 525
I R GGEDY+F+LLTGY EPP GV REG +NPYFPG AI+MA ++ + E+ DGT
Sbjct: 102 IVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGT 161
Query: 524 PATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKL 345
PAT SQ+AKDV TFL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKL
Sbjct: 162 PATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKL 221
Query: 344 AYKP 333
AY+P
Sbjct: 222 AYRP 225
>J04444-1|AAA52135.1| 325|Homo sapiens protein ( Human cytochrome
c-1 gene, complete cds. ).
Length = 325
Score = 169 bits (411), Expect = 8e-42
Identities = 75/124 (60%), Positives = 93/124 (75%)
Frame = -2
Query: 704 ICSGRKGGEDYIFALLTGYMEPPAGVVXREGQNYNPYFPGGAISMAQVLFDEAAEYSDGT 525
I R GGEDY+F+LLTGY EPP GV REG +NPYFPG AI+MA ++ + E+ DGT
Sbjct: 200 IVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGT 259
Query: 524 PATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKL 345
PAT SQ+AKDV TFL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKL
Sbjct: 260 PATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKL 319
Query: 344 AYKP 333
AY+P
Sbjct: 320 AYRP 323
>DQ300360-1|ABB96244.1| 325|Homo sapiens cytochrome c-1 protein.
Length = 325
Score = 169 bits (411), Expect = 8e-42
Identities = 75/124 (60%), Positives = 93/124 (75%)
Frame = -2
Query: 704 ICSGRKGGEDYIFALLTGYMEPPAGVVXREGQNYNPYFPGGAISMAQVLFDEAAEYSDGT 525
I R GGEDY+F+LLTGY EPP GV REG +NPYFPG AI+MA ++ + E+ DGT
Sbjct: 200 IVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGT 259
Query: 524 PATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKL 345
PAT SQ+AKDV TFL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKL
Sbjct: 260 PATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKL 319
Query: 344 AYKP 333
AY+P
Sbjct: 320 AYRP 323
>CR541674-1|CAG46475.1| 325|Homo sapiens CYC1 protein.
Length = 325
Score = 169 bits (411), Expect = 8e-42
Identities = 75/124 (60%), Positives = 93/124 (75%)
Frame = -2
Query: 704 ICSGRKGGEDYIFALLTGYMEPPAGVVXREGQNYNPYFPGGAISMAQVLFDEAAEYSDGT 525
I R GGEDY+F+LLTGY EPP GV REG +NPYFPG AI+MA ++ + E+ DGT
Sbjct: 200 IVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGT 259
Query: 524 PATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKL 345
PAT SQ+AKDV TFL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKL
Sbjct: 260 PATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKL 319
Query: 344 AYKP 333
AY+P
Sbjct: 320 AYRP 323
>BT019798-1|AAV38601.1| 325|Homo sapiens cytochrome c-1 protein.
Length = 325
Score = 169 bits (411), Expect = 8e-42
Identities = 75/124 (60%), Positives = 93/124 (75%)
Frame = -2
Query: 704 ICSGRKGGEDYIFALLTGYMEPPAGVVXREGQNYNPYFPGGAISMAQVLFDEAAEYSDGT 525
I R GGEDY+F+LLTGY EPP GV REG +NPYFPG AI+MA ++ + E+ DGT
Sbjct: 200 IVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGT 259
Query: 524 PATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKL 345
PAT SQ+AKDV TFL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKL
Sbjct: 260 PATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKL 319
Query: 344 AYKP 333
AY+P
Sbjct: 320 AYRP 323
>BC024650-1|AAH24650.1| 315|Homo sapiens Unknown (protein for
IMAGE:4470223) protein.
Length = 315
Score = 169 bits (411), Expect = 8e-42
Identities = 75/124 (60%), Positives = 93/124 (75%)
Frame = -2
Query: 704 ICSGRKGGEDYIFALLTGYMEPPAGVVXREGQNYNPYFPGGAISMAQVLFDEAAEYSDGT 525
I R GGEDY+F+LLTGY EPP GV REG +NPYFPG AI+MA ++ + E+ DGT
Sbjct: 190 IVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGT 249
Query: 524 PATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKL 345
PAT SQ+AKDV TFL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKL
Sbjct: 250 PATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKL 309
Query: 344 AYKP 333
AY+P
Sbjct: 310 AYRP 313
>BC020566-1|AAH20566.1| 325|Homo sapiens cytochrome c-1 protein.
Length = 325
Score = 169 bits (411), Expect = 8e-42
Identities = 75/124 (60%), Positives = 93/124 (75%)
Frame = -2
Query: 704 ICSGRKGGEDYIFALLTGYMEPPAGVVXREGQNYNPYFPGGAISMAQVLFDEAAEYSDGT 525
I R GGEDY+F+LLTGY EPP GV REG +NPYFPG AI+MA ++ + E+ DGT
Sbjct: 200 IVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGT 259
Query: 524 PATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKL 345
PAT SQ+AKDV TFL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKL
Sbjct: 260 PATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKL 319
Query: 344 AYKP 333
AY+P
Sbjct: 320 AYRP 323
>BC015616-1|AAH15616.1| 325|Homo sapiens cytochrome c-1 protein.
Length = 325
Score = 169 bits (411), Expect = 8e-42
Identities = 75/124 (60%), Positives = 93/124 (75%)
Frame = -2
Query: 704 ICSGRKGGEDYIFALLTGYMEPPAGVVXREGQNYNPYFPGGAISMAQVLFDEAAEYSDGT 525
I R GGEDY+F+LLTGY EPP GV REG +NPYFPG AI+MA ++ + E+ DGT
Sbjct: 200 IVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGT 259
Query: 524 PATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKL 345
PAT SQ+AKDV TFL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKL
Sbjct: 260 PATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKL 319
Query: 344 AYKP 333
AY+P
Sbjct: 320 AYRP 323
>BC001006-1|AAH01006.1| 325|Homo sapiens cytochrome c-1 protein.
Length = 325
Score = 169 bits (411), Expect = 8e-42
Identities = 75/124 (60%), Positives = 93/124 (75%)
Frame = -2
Query: 704 ICSGRKGGEDYIFALLTGYMEPPAGVVXREGQNYNPYFPGGAISMAQVLFDEAAEYSDGT 525
I R GGEDY+F+LLTGY EPP GV REG +NPYFPG AI+MA ++ + E+ DGT
Sbjct: 200 IVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGT 259
Query: 524 PATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKL 345
PAT SQ+AKDV TFL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKL
Sbjct: 260 PATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKL 319
Query: 344 AYKP 333
AY+P
Sbjct: 320 AYRP 323
>BC130474-1|AAI30475.1| 723|Homo sapiens tripartite
motif-containing 42 protein.
Length = 723
Score = 31.9 bits (69), Expect = 2.3
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 554 QIELAP*RWHLLGSMDCSSVPHVXLHQQEVPCNQSVARRC 673
+++ P HL+ ++C + LH +PCN S+ +C
Sbjct: 130 EVKSIPANSHLVNHLNCPMCSRLRLHSFMLPCNHSLCEKC 169
>BC130472-1|AAI30473.1| 723|Homo sapiens tripartite
motif-containing 42 protein.
Length = 723
Score = 31.9 bits (69), Expect = 2.3
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 554 QIELAP*RWHLLGSMDCSSVPHVXLHQQEVPCNQSVARRC 673
+++ P HL+ ++C + LH +PCN S+ +C
Sbjct: 130 EVKSIPANSHLVNHLNCPMCSRLRLHSFMLPCNHSLCEKC 169
>AK097416-1|BAC05042.1| 708|Homo sapiens protein ( Homo sapiens
cDNA FLJ40097 fis, clone TESTI2004169. ).
Length = 708
Score = 31.9 bits (69), Expect = 2.3
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 554 QIELAP*RWHLLGSMDCSSVPHVXLHQQEVPCNQSVARRC 673
+++ P HL+ ++C + LH +PCN S+ +C
Sbjct: 130 EVKSIPANSHLVNHLNCPMCSRLRLHSFMLPCNHSLCEKC 169
>AF521868-1|AAO14945.1| 723|Homo sapiens tripartite motif protein
42 protein.
Length = 723
Score = 31.9 bits (69), Expect = 2.3
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 554 QIELAP*RWHLLGSMDCSSVPHVXLHQQEVPCNQSVARRC 673
+++ P HL+ ++C + LH +PCN S+ +C
Sbjct: 130 EVKSIPANSHLVNHLNCPMCSRLRLHSFMLPCNHSLCEKC 169
>AJ238850-1|CAB52754.1| 1203|Homo sapiens hyperpolarization-activated
channel type 4 protein.
Length = 1203
Score = 29.9 bits (64), Expect = 9.3
Identities = 24/76 (31%), Positives = 29/76 (38%)
Frame = +1
Query: 460 SGSEHHFKKVATSLASCDAVAGVPSLYSAASSNRTCAIEMAPPGKYGL*FCPSRXTTPAG 639
+G H K + SL+S D+ P L A S + APPG G P P
Sbjct: 905 AGFGHFHKALGGSLSSSDSPLLTP-LQPGARSPQAAQPSPAPPGARGGLGLPEHFLPPPP 963
Query: 640 GSM*PVSSAKM*SSPP 687
S P SS PP
Sbjct: 964 SSRSPSSSPGQLGQPP 979
>AJ132429-1|CAB42604.1| 1203|Homo sapiens hyperpolarization-activated
cyclic nucleotide gated cation channel hHCN4 protein.
Length = 1203
Score = 29.9 bits (64), Expect = 9.3
Identities = 24/76 (31%), Positives = 29/76 (38%)
Frame = +1
Query: 460 SGSEHHFKKVATSLASCDAVAGVPSLYSAASSNRTCAIEMAPPGKYGL*FCPSRXTTPAG 639
+G H K + SL+S D+ P L A S + APPG G P P
Sbjct: 905 AGFGHFHKALGGSLSSSDSPLLTP-LQPGARSPQAAQPSPAPPGARGGLGLPEHFLPPPP 963
Query: 640 GSM*PVSSAKM*SSPP 687
S P SS PP
Sbjct: 964 SSRSPSSSPGQLGQPP 979
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,239,497
Number of Sequences: 237096
Number of extensions: 2136844
Number of successful extensions: 3975
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3974
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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