Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_pT_C17
(708 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75533-7|CAA99820.1| 285|Caenorhabditis elegans Hypothetical pr... 150 1e-36
AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical... 29 4.3
AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine sy... 29 4.3
Z78065-9|CAI79172.1| 273|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z78064-11|CAI79210.1| 273|Caenorhabditis elegans Hypothetical p... 28 5.7
AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation transp... 28 5.7
AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation transp... 28 5.7
AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical... 28 5.7
AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical... 28 5.7
Z81575-9|CAB04635.1| 130|Caenorhabditis elegans Hypothetical pr... 28 7.5
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 28 7.5
AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical ... 27 9.9
AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical ... 27 9.9
AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical ... 27 9.9
>Z75533-7|CAA99820.1| 285|Caenorhabditis elegans Hypothetical
protein C54G4.8 protein.
Length = 285
Score = 150 bits (363), Expect = 1e-36
Identities = 68/127 (53%), Positives = 86/127 (67%)
Frame = -2
Query: 692 RKGGEDYIFALLTGYMEPPAGVVXREGQNYNPYFPGGAISMAQVLFDEAAEYSDGTPATA 513
R GG+DY+F+LLTGY+E PAGV +G+ YNPYFPGG ISM Q LFDE EY DGTPAT
Sbjct: 156 RHGGDDYVFSLLTGYLEAPAGVKVDDGKAYNPYFPGGIISMPQQLFDEGIEYKDGTPATM 215
Query: 512 SQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKP 333
SQ AKDV+ F+ W +EP D R++ +K + +A V+ Y KRH WS KS+K +K
Sbjct: 216 SQQAKDVSAFMHWAAEPFHDTRKKWALKIAALIPFVAVVLIYGKRHIWSFTKSQKFLFKT 275
Query: 332 VSKK*TP 312
V + P
Sbjct: 276 VKGREPP 282
>AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical
protein Y46G5A.19 protein.
Length = 314
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 644 EPPAGVVXREGQNYNPYFPGGAISM--AQVLFDEAAEYSD 531
E P V+ +GQ +PG A S+ +VLF E ++Y D
Sbjct: 26 EEPTKVLKSDGQEMGGAWPGQAFSLQVKKVLFHEKSKYQD 65
>AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine
synthase protein.
Length = 314
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 644 EPPAGVVXREGQNYNPYFPGGAISM--AQVLFDEAAEYSD 531
E P V+ +GQ +PG A S+ +VLF E ++Y D
Sbjct: 26 EEPTKVLKSDGQEMGGAWPGQAFSLQVKKVLFHEKSKYQD 65
>Z78065-9|CAI79172.1| 273|Caenorhabditis elegans Hypothetical
protein F57B1.8 protein.
Length = 273
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 227 INLFYLPSRVYFVTRGGLL*LCYHAWSRRRETVL 126
I+ F L S V + GG L LC+ WSR ++ L
Sbjct: 6 ISSFVLSSLVSTILTGGFLVLCFILWSRFKQVRL 39
>Z78064-11|CAI79210.1| 273|Caenorhabditis elegans Hypothetical
protein F57B1.8 protein.
Length = 273
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 227 INLFYLPSRVYFVTRGGLL*LCYHAWSRRRETVL 126
I+ F L S V + GG L LC+ WSR ++ L
Sbjct: 6 ISSFVLSSLVSTILTGGFLVLCFILWSRFKQVRL 39
>AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1121
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 650 YMEPPAGVVXREGQNYNPYFPGGAISMAQVLF 555
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
>AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1045
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 650 YMEPPAGVVXREGQNYNPYFPGGAISMAQVLF 555
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
>AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical
protein Y105E8A.12b protein.
Length = 1045
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 650 YMEPPAGVVXREGQNYNPYFPGGAISMAQVLF 555
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
>AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical
protein Y105E8A.12a protein.
Length = 1121
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 650 YMEPPAGVVXREGQNYNPYFPGGAISMAQVLF 555
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
>Z81575-9|CAB04635.1| 130|Caenorhabditis elegans Hypothetical
protein R08H2.10 protein.
Length = 130
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 55 HLTLQFDCATASQWQNAINIIT 120
H+TL FDCAT SQ + + +T
Sbjct: 27 HVTLSFDCATTSQKKITLKNVT 48
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = +1
Query: 436 VICRRSSSSGSEHHFKKVATSLASCDAVAGVPSLYSAASSNRTCAIEMAPPGKYGL*FCP 615
VIC+ G E+ K ATS + G L S+NRT + PG GL C
Sbjct: 1972 VICQCPQGLGGEYCEKITATSCHQLECKNGGYCLKPDPSANRTSPTCLCSPGFKGL-LCS 2030
Query: 616 S 618
S
Sbjct: 2031 S 2031
>AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical
protein T04B8.5c protein.
Length = 836
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 550 KQLSTVTARRRLRHSSPRMLRLS*NGAQNPNWTTVG 443
K +T +RH +++RLS GA PN +G
Sbjct: 533 KAFVELTMSNNIRHGIQQLMRLSGLGAMKPNTVVIG 568
>AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical
protein T04B8.5b protein.
Length = 939
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 550 KQLSTVTARRRLRHSSPRMLRLS*NGAQNPNWTTVG 443
K +T +RH +++RLS GA PN +G
Sbjct: 636 KAFVELTMSNNIRHGIQQLMRLSGLGAMKPNTVVIG 671
>AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical
protein T04B8.5a protein.
Length = 952
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 550 KQLSTVTARRRLRHSSPRMLRLS*NGAQNPNWTTVG 443
K +T +RH +++RLS GA PN +G
Sbjct: 649 KAFVELTMSNNIRHGIQQLMRLSGLGAMKPNTVVIG 684
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,759,610
Number of Sequences: 27780
Number of extensions: 321800
Number of successful extensions: 864
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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