Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C13
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz...    29   0.56 
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   3.0  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   6.9  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    25   9.1  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    25   9.1  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.1  

>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
           Mug22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = -2

Query: 333 SVSCIRTECIVF*KAEKKIFDIKVFVIAEFSDKTCRXLTFQISVLREFQNIKSSQLQFF 157
           SVS   T  +VF    K+I  +  F +  +S K C      + V +EFQ   SSQ  FF
Sbjct: 90  SVSTSNTVKMVFMSLAKQIEQMLKFCMMVYS-KLCEAFETTLKVAKEFQICDSSQEWFF 147


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 169 LGRFYILKFPQHTNLKS*VPTGFITKFCYNKNLNIEYLFFCFSKNNAFCSDA*YRSQ 339
           L R + L    + +L S      +++ C++KNL+IE      SK    C +  Y  Q
Sbjct: 189 LSRIFFLIDKNNDDLLSVDELNSLSEKCFSKNLSIEDASEILSKVKEICPEGVYEGQ 245


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 105 VKKNQLSDSVKNPFENVSSVQFDIFKLERCYQNR 4
           V+  Q+S+ + +  E VSS Q ++FKL   Y+ +
Sbjct: 471 VEAEQMSNRIDDGLEYVSSSQQELFKLLDSYETQ 504


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 489 LDSFNYYLGSILLF*KIYLNNLDSTFKKHVFNIRIRPYSQD 367
           +  F Y   ++L+    Y N +  T KK   NI I PY +D
Sbjct: 534 IKKFEYESNALLVSGTGYYNVVLETLKKSSSNILIMPYLKD 574


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = -1

Query: 364 IRWPTKLYFVICIMHQNRMHCFLKSRKKDIRY 269
           I W   L    CI       CFL S KK  RY
Sbjct: 245 IPWVEPLALADCIQKSGNPICFLDSAKKPGRY 276


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 34  YVKLNTTNIFKWVFNRIG 87
           Y  ++TT+IFK VFN +G
Sbjct: 269 YTAMHTTSIFKSVFNILG 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,949
Number of Sequences: 5004
Number of extensions: 54400
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)