Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C12
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    27   4.0  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   4.0  
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    26   5.3  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   7.0  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   9.3  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   9.3  

>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 629 ISGFREREYTPNMNTNQIKTINVDFIF 709
           I+G+ EREY PN   NQ    N   I+
Sbjct: 85  ITGYAEREYVPNFVFNQEYYANTHAIY 111


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 635 GFREREYTPNMNTNQI 682
           GFR RE+ P + TNQI
Sbjct: 458 GFRSREFVPPVRTNQI 473


>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 626 FISGFREREYTPNMNTNQIKTINVDFIFNINCSNI 730
           +I G RE+E     + +++  +N+D    + CSN+
Sbjct: 53  YIRGIREQELFIYDSVSELMDLNIDITIAMPCSNL 87


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 562 GEGTLHDNCNLRRLKN 609
           GEG L+DN N+ +LKN
Sbjct: 230 GEGCLNDNDNISKLKN 245


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 766 DRTHVPNLEHXDNIATVYIKYEVNIDRFDLVRIHVGG 656
           D T+V N      +    +  +++ID+FDL    VGG
Sbjct: 310 DITNVQNATQLRKLIAKSMYLDISIDQFDLFLTEVGG 346


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = +3

Query: 537 SSIHCGSPRRRHSS*QLQLAPAEEFQLRVYLFPASVNENTPPT*IRTKSKRSMLTS 704
           SS+H  SP+R H S   + +P +  +  V   P S  E   PT  + KS +S+ TS
Sbjct: 110 SSLHRSSPKRPHDS-LGEESPGKLLRTSVKQEPDSEEEIDSPT--KKKSFKSLDTS 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,635
Number of Sequences: 5004
Number of extensions: 58077
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)