Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_pT_C12
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0472 + 21145523-21145892,21146098-21146141,21146916-211469...    29   4.2  
05_04_0328 - 20303330-20303440,20304123-20304942,20305170-203053...    28   9.7  

>06_03_0472 +
           21145523-21145892,21146098-21146141,21146916-21146974,
           21147090-21147162,21147281-21147342,21147424-21147499,
           21147618-21147692,21148699-21148782,21148947-21149015,
           21149614-21149673,21150211-21150288,21150468-21150556,
           21150868-21150964,21151084-21151137,21151643-21151738,
           21151930-21152118,21152200-21152277,21152511-21152555,
           21152728-21152820,21152907-21152987
          Length = 623

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
 Frame = -3

Query: 726 LLQFILNMKSTLIVLIWFVFMLGVYSRSRKP-------EINKHGAEILQPAQVAVVMKSA 568
           LLQ + +M  +L+VLI F+ +L + SR+  P        ++    E+ Q A VA  +  A
Sbjct: 370 LLQGVASMAKSLVVLITFLTILSILSRTGVPWFLKLMISLSSQTNELYQLAAVAFCLLFA 429

Query: 567 FAED 556
           +  D
Sbjct: 430 WCSD 433


>05_04_0328 -
           20303330-20303440,20304123-20304942,20305170-20305368,
           20305417-20305954
          Length = 555

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -3

Query: 480 TTITNTIMVIKLKIIQEENV---QIKLCVITRLF*INVA 373
           TT TNT  VIKL++   + +   QIKL ++  L+ IN A
Sbjct: 496 TTQTNTEQVIKLQVSNSKEIQELQIKLQILKSLWNINSA 534


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,511,887
Number of Sequences: 37544
Number of extensions: 322405
Number of successful extensions: 613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)